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Data from: Patterns of cranial shape diversification during the phylogenetic branching process of New World monkeys (Primates: Platyrrhini)
负责人:
关键词:
Ecological axes;molecular phylogeny;Body Size;Comparative studies;semilandmarks;Cacajao calvus;Morphometrics;natural selection
DOI:
doi:10.5061/dryad.n626b
摘要:
the cranial shape diversification related to body size and ecology during the phylogenetic branching process of platyrrhines. To investigate
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Rhyssoplax olivaceus;Lineus lacteus;Novocrania anomala;Boccardia proboscidea;Clymenella torquata;Glottidia pyramidata;Phascolosoma agassizii;saturation;Patella vulgata;Adineta vaga;Leptochiton asellus;Megadasys sp.;Spathoderma clenchi;Schistosoma mansoni;Platyzoa;Brachionus plicatilis;Loxosoma pectinaricola;Paranemertes peregrina;Phenacolepas pulchella;Taenia pisiformis;Ruditapes philippinarum;Sepioteuthis lessoniana;Macellomenia schanderi;Capitella teleta;Phoronis vancouverensis;Pomatoceros lamarckii;Alexandromenia crassa;Prochaetoderma californicum;Entalina tetragona;Symbion americanus;Spiralia;Neomenia carinata;Dosidicus gigas;Alitta virens;Tubulanus polymorphus-Halanych;Nemertea;Cephalothrix linearis;Mollusca;drosophila melanogaster;Laqueus californicus;Crassostrea gigas;Laevipilina hyalina;Macrodasys sp.;Phoronida;Aplysia californica;Mytilus edulis;Hemithiris psittacea;Bryozoa;Pectinaria gouldii;Octopus vulgaris;Brachiopoda;Compositional heterogeneity;Lineus longissimus;Gnathostomula paradoxa;Leptochiton rugatus;Graptacme eborea;Cephalothrix hongkongensis;Lottia gigantea;Nuculana pernula;Helobdella robusta;Priapulus caudatus;Daphnia pulex;Barentsia gracilis;Trochozoa;Malacobdella grossa;Enucula tenuis;Loxosomella cf. vivipara;Crepidula fornicata;Haliotis rufescens;Polyzoa;Nucella lapillus;Pedicellina cernua;Sagitta sp.;Tubulanus polymorphus-Struck;Annelida;Gadila tolmiei;Cerebratulus marginatus;Entoprocta;Villosa lienosa;Bugula neritina;Glycera dibranchiata;Lineus ruber;Sepia esculenta;Solemya velum;Long branch attraction;Schmidtea mediterranea;Pinctada fucata;Phoronis psammophila
DOI:
doi:10.5061/dryad.30k4v
摘要:
strict screening for paralogy using a tree-based approach. In order to reduce possible sources of systematic error, we calculated branch-length
Data from: Temporal trends of predation resistance in Paleozoic crinoid arm branching morphologies
负责人:
关键词:
Paleozoic;Camerata;nonlethal predation;predation;Adaptation;branching;Crinoidea
DOI:
doi:10.5061/dryad.5h45c
摘要:
as a function of arm branching pattern. Here, using a metric for resilience to predation (“expected arm loss,” EAL), we test the hypothesis that the inc
Data from: Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts
负责人:
关键词:
454 sequencing;crested newt;Gene tree;transcriptome;multi-species coalescent;Triturus;marbled newt
DOI:
doi:10.5061/dryad.mm81p
摘要:
-based estimations of the species tree differ from one another. The data concatenation based species tree shows high branch support but branching order
Data from: Does gene tree discordance explain the mismatch between macroevolutionary models and empirical patterns of tree shape and branching times?
负责人:
关键词:
Multispecies coalescent;phylogeny;birth-death process;Genealogy
DOI:
doi:10.5061/dryad.8f97r
摘要:
, empirical phylogenies are less balanced and have branching times closer to the root compared to phylogenies predicted by common null models. This differenc
Data from: Seabird and Louse Coevolution: Complex Histories Revealed by 12S rRNA Sequences and Reconciliation Analyses
负责人:
关键词:
BPA;reconciliation analysis;seabirds;host-switching;cospeciation;sorting events;Lice;relative rate test
DOI:
doi:10.5061/dryad.593
摘要:
ant rate heterogeneity over all of its branches whereas part of the louse tree did show rate heterogeneity. An examination of the codivergent nodes revealed that seabirds
Data from: Who let the CAT out of the bag? accurately dealing with substitutional heterogeneity in phylogenomic analyses
负责人:
关键词:
site-heterogeneity;Simulation;data partitioning;substitution models;phylogenomics
DOI:
doi:10.5061/dryad.85b2m
摘要:
branching patterns that were identical to the known tree. However, CAT-F81 consistently performed worse than other models in inferring the correct branching
Data from: Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in phylogenetic trees
负责人:
关键词:
metagenomics;RecA;rpoB;genomics;phylogeny;GOS;Evolution;tree of life
DOI:
doi:10.5061/dryad.8384
摘要:
ted to any organisms for which sequence data is currently available. If there exist any major, but so-far-undiscovered, deeply branching lineages in the tree of life
Data from: Comparing cal3 and other a posteriori time-scaling approaches in a case study with the pterocephaliid trilobites
负责人:
关键词:
time-scaling methods;Pterocephaliidae;dating phylogenies;Cambrian-Ordovician;phylogenetic comparative methods;Trilobita
DOI:
doi:10.5061/dryad.292dd
摘要:
e approaches use probabilistic models of branching, extinction, and sampling processes to date samples of trees, such as the recently developed cal3 method

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