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Data from: Pleiotropy can be effectively estimated without counting phenotypes through the rank of genotype-phenotype map
负责人:
关键词:
Genotype-phenotype map;phylogeny;pleiotropy;protein sequences
DOI:
doi:10.5061/dryad.s84fm
摘要:
the fitness components, and r is the rank of mutational effects of an amino acid site. Together, the 'effective gene pleiotropy' (Ke) estimated by Gu-2007-method ha
Data from: In silico site-directed mutagenesis informs species-specific predictions of chemical susceptibility derived from the Sequence
负责人:
关键词:
ecdysone receptor;docking simulations;acetylcholinesterase;sequence similarity
DOI:
doi:10.5061/dryad.2tg6967
摘要:
of chemical susceptibility across species involves comparisons of individual amino acid residues at key positions involved in protein-chemical interac
Data from: Molecular evolution of key metabolic genes during transitions to C4 and CAM photosynthesis
负责人:
关键词:
Caryophyllales;convergent evolution;gene duplications;phylogeny;positive selection;Portullugo;Portulacineae
DOI:
doi:10.5061/dryad.47m18
摘要:
genes. However, we documented a significantly higher level of convergent amino acid substitutions in CCM genes, especially in C4 taxa. CONCLUSIONS: Our analyses
Data from: Metabolic adaptations in a range-expanding arthropod
负责人:
关键词:
GC-MS metabolomics;common garden;holoceen;range expansion;essential amino acids;Tetranychus urticae;global change;life-history evolution;Arthropod;Holocene
DOI:
doi:10.5061/dryad.78cc8
摘要:
s seemed not related with shifts in the mites’ energetic metabolism, but rather with differential use of amino acids. Particularly, more dispersive
Data from: Sequence entropy of folding and the absolute rate of amino acid substitutions
负责人:
关键词:
protein evolution;epistasis;Coevolution;substitution rate;Contingency;transition state theory;statistical mechanics;evolutionary Stokes shift;entrenchment
DOI:
doi:10.5061/dryad.7b8vb
摘要:
e beyond the capabilities of current models. Here we use parallels between amino acid substitutions and chemical reaction kinetics to develop an improved theory of protein
Data from: Selection analyses of paired HIV-1 gag and gp41 sequences obtained before and after antiretroviral therapy
负责人:
关键词:
Retrovirus;Human immunodeficiency virus 1;Viral evolution;Antivirals;data processing
DOI:
doi:10.5061/dryad.71b5t
摘要:
, we performed dN/dS analyses and curated gag and gp41 sequence datasets from more than 400 published studies to generate site-specific amino acid
Data from: Species-specific plant-soil feedback effects on above-ground plant-insect interactions
负责人:
关键词:
Brachycaudus cardui;plant-soil (below-ground) interactions;Aphis jacobaeae;Jacobaea vulgaris;Soil fungal community;Amino acids;aphid;Pyrrolizidine alkaloids
DOI:
doi:10.5061/dryad.18ph4
摘要:
), in a multispecies mixture of the conditioned soils and in control (unconditioned) field soil. We measured plant biomass, concentrations of primary (amino acid
Data from: Comparative static (anoxic) and shaking culture of metabolite derived from Methyl Red degradation by Lysinibacillus fusiformis strain W1B6
负责人:
关键词:
azo dye;biotransformation;3 years;Lysinibacillus fusiformis;biodegradation;xenobiotic;10 years;metabolite by-product
DOI:
doi:10.5061/dryad.2cb0g0h
摘要:
i.e. benzoic acid, 2- amino and 1.4-benzenediamine, N,N-dimethyl-. The concentration of both compounds was higher in shaking due to the biotransformation
Data from: Bursts of amino acid replacements in protein evolution
负责人:
关键词:
adaptive walks;punctuated equilibrium;positive selection;rate of evolution
DOI:
doi:10.5061/dryad.40vp30d
摘要:
between 6 and 38 amino acid substitutions. These bursts were extremely unlikely to have occurred neutrally, and were apparently caused
Data from: Stable isotope tracers reveal a trade-off between reproduction and immunity in a reptile with competing needs
负责人:
关键词:
leucine;protein deposition rate;allocation;Uta stansburiana;Amino acids;protein allocation rate;corticosterone;lizards
DOI:
doi:10.5061/dryad.v3t77
摘要:
labeled amino acids to directly compare protein allocation by lizards to eggs and healing wounds. 3.We showed that these two demands compete for the sam

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