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Data from: Phylogenetic relationships and timing of diversification in gonorynchiform fishes inferred using nuclear gene DNA sequences (Teleostei
负责人:
关键词:
Chanos;Cretaceous;Gonorynchus;Ostariophysi;Gonorynchiformes;Parakneria;Jurassic;Kneria;Triassic;Grasseichthys;Cenozoic;Cromeria;Phractolaemus
DOI:
doi:10.5061/dryad.hb653
摘要:
and a relaxed molecular clock to estimate times of evolutionary divergence. This “tip dating” strategy accommodates uncertainty in the phylogenetic resolution of fossil taxa tha
Data from: Arrival and diversification of caviomorph rodents and platyrrhine primates in South America.
负责人:
关键词:
Rodents;Radiation;Rodentia;Primates;phylogeny;molecular dating;diversification;Cenozoic;Supermatrix;Caviomorpha;Platyrrhini
DOI:
doi:10.5061/dryad.8512
摘要:
, and eight fossil calibration constraints, we estimated the times of origin and diversification of platyrrhines and caviomorphs via a Bayesian
Data from: Revised classification and evolution of leucotrichiine microcaddisflies (Trichoptera: Hydroptilidae) based on morphological
负责人:
关键词:
Leucotrichiinae;Trichoptera;Hydroptilidae
DOI:
doi:10.5061/dryad.620tg
摘要:
were analysed under parsimony and Bayesian inference. In addition, a relaxed molecular clock divergence time estimate was conducted to determine the age
Data from: Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
负责人:
关键词:
Amniota;Permian;Emys;Molecular datings;Carboniferous;Phrynops;Archosauria;evo-devo;Cretaceous;Chelonoidis;Caretta;Jurassic;Devonian;Triassic;Protopterus;Caiman;Chelonia;Podarcis;Evolution;Cenozoic;phylogenomics
DOI:
doi:10.5061/dryad.87b01fq0
摘要:
ause of substitution saturation at third codon positions. Relaxed molecular clock methods estimate the divergence between turtles and archosaurs around 255 million yea
Data from: Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels
负责人:
关键词:
Mastacembelus;Biogeography;Continental radiation;Dispersal;molecular dating;Mastacembelidae;diversification dynamics
DOI:
doi:10.5061/dryad.1jq96
摘要:
molecular phylogeny to date was reconstructed for African spiny eels. Divergence times were estimated applying a Bayesian relaxed clock comparing fossil and geological
Data from: Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales)
负责人:
关键词:
Nothofagus;age constraints;fossil record;Fagales;molecular dating;confidence intervals;calibration;relaxed molecular clock
DOI:
doi:10.5061/dryad.qq106tm4
摘要:
of Fagales. Molecular dating analyses were conducted for each scenario using maximum likelihood (RAxML + r8s) and Bayesian (BEAST) approaches on sequence data
Data from: Early photosynthetic eukaryotes inhabited low-salinity habitats
负责人:
关键词:
Cyanothece sp. PCC8801;Gloeomargarita lithophora;Volvox carteri nagariensis UTE2908;Fistulifera sp. JPCC DA0580;Pseudendoclonium akinetum;Pyramimonas parkeae;Precambrian;Anabaena cylindrica PCC7122;Photosynthetic eukaryotes;Cyanophora paradoxa;Prochlorococcus marinus str. MIT9515;Parachlorella kessleri;Synechococcus sp. WH8016;Synechococcus sp. PCC7002;Cyanidium caldarium;Cycas taitungensis;Pedinomonas minor;Chlamydomonas reinhardtii;Psilotum nudum;relaxed molecular clock.;Gloeobacter violaceus PCC7421;Prochloron didemni P2 Fiji;Anthoceros formosae;Mesoproterozoic;Thermosynechococcus elongatus BP1;Welwitschia mirabilis;Prasinoderma colonial;Pseudanabaena biceps PCC7429;Cyanothece sp. PCC7425;Angiopteris evecta;Cyanothece sp. PCC7424;Chlorokybus atmophyticus;Synechococcus sp. JA-3-3Ab;Coccomyxa sp. C169;Floydiella terrestris;Schizomeris leibleinii;Richelia intracellularis HH01;Microcystis aeruginosa NIES843 Micromonas sp. RCC299;Nodularia spumigena CCY9414;Porphyra purpurea;Adiantum capillus veneris;Buus microphylla;Calycanthus floridus;Nymphaea alba;Phaeodactylum tricornutum;Spinacia oleracea;Nodosilinea nodulosa PCC7104;Odontella sinensis;Chloroplast;Physcomitrella patens subsp patens;Great Oxidation Event;Aneura mirabilis;Cyanobacteria;Leptolyngbya sp. PCC7375;Synedra acus;Prochlorococcus marinus str. MIT9211;Cyanobium sp. PCC7001;Leptolyngbya sp. PCC7376;Verdigellas peltata;Bryopsis hypnoides;Gracilaria tenuistipitata;Synechococcus sp. RCC307;Ptilidium pulcherrimum;Prasinococcus sp. CCMP1194;Dunaliella salina;Nostoc azollae 0708;Ranunculus macranthus;Microcoleus vaginatus FGP2;Scenedesmus obliques;Synechococcus sp. PCC7335;Chaetosphaeridium globosum;Oscillatoria sp. PCC6506;Pseudanabaena sp. PCC7367;Raphidiopsis brookii D9;Richelia intracellularis HM01;Trichodesmium erythraeum IMS101;Prochloron didemni P3 Solomon;primary endosymbiotic event;Klebsormidium flaccidum;Acaryochloris marina MBIC11017;Arthrospira sp. PCC8005;Marchantia polymorpha;Staurastrum punctulatum;Coffea arabica;Porphyra yezoensis;Crocosphaera watsonii WH0003;Stigeoclonium helveticum;Pleurocapsa sp. PCC7327;Proterozoic;Gnetum parvifolium;Thalassiosira oceanica CCMP1005;Chara vulgaris;Leptosira terrestris;Cyanidioschyzon merolae strain 10D;Synechococcus sp. CB0101;Paulinella chromatophora;Nostoc punctiforme PCC73102;Pycnococcus provasolii;Illicium oligandrum;Prochlorococcus marinus str. AS9601;Nostoc sp. PCC7120;Fischerella sp. JSC11;Synechocystis sp. PCC6803;Cyanobium gracile PCC6307;Zygnema circumcarinatum;Microcoleus chthonoplastes PCC7420;Neoproterozoic;Pinus contorta;Calothrix sp. PCC6303;Ephedra equisetina;Synechococcus elongatus PCC6301;Amborella trichopoda;Cryptomeria japonica;Monomasti sp. OKE1;Pseudanabaena sp. PCC6802;phylogenomics;Lyngbya sp. PCC8106;Pre-Cambrian;Synechococcus sp. JA-2-3B'a(2-13);Oltmannsiellopsis viridis Oocystis solitaria SAG83 80;Syntrichia ruralis;Nephroselmis olivacea;Synechococcus sp. CC9605;Mesostigma viride;Ostreococcus tauri;Lyngbya majuscula 3L;Oedogonium cardiacum;Prochlorococcus marinus str. MIT9303;Cyanothece sp. CCY0110
DOI:
doi:10.5061/dryad.421p2
摘要:
event occurred. We present phylogenomic and molecular clock analyses, including data from cyanobacterial and chloroplast genomes using a Bayesian approach
Data from: An extreme case of plant-insect codiversification: figs and fig-pollinating wasps
负责人:
关键词:
Ficus; Agaonidae;host switching;Biogeography;Ficus;Coevolution;cospeciation;Agaonidae;phylogeny;Long branch attraction;Cretaceous
DOI:
doi:10.5061/dryad.hr620
摘要:
w analytical tool, Jane 2, for event-based phylogenetic reconciliation analysis of very large data sets. Separate Bayesian phylogenetic analyses for figs

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