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Data from: Ecological and genetic determinants of plasmid distribution in Escherichia coli
负责人:
关键词:
plasmid profile;population structure;antibiotic resistance;Escherichia coli;mobile elements;Bos taurus;replicon typing
DOI:
doi:10.5061/dryad.5f1f8
摘要:
Bacterial plasmids are important carriers of virulence and antibiotic resistance genes. Nevertheless, little is known of the determinants of plasmid
Data from: Forest without prey: livestock sustain a common leopard population in Pakistan
负责人:
关键词:
blocking oligonucleotide DNA metabarcoding human-carnivore conflict next generation sequencing
DOI:
doi:10.5061/dryad.87rm1
摘要:
by domestic goat Capra hircus (64.9%), followed by domestic dog Canis lupus familiaris (17.5%) and cow Bos taurus (12.3%). Domestic animals (goat, dog, cow
Data from: Genomic characterisation of the indigenous Irish Kerry cattle breed
负责人:
关键词:
genetic diversity;conservation genomics;population genomics;selection signature;Cattle;Inbreeding;SNP array;Bos taurus;endangered breed
DOI:
doi:10.5061/dryad.8fk81
摘要:
Kerry cattle are an endangered landrace heritage breed of cultural importance to Ireland. In the present study we have used genome-wide SNP array
Data from: Here and there, but not everywhere: repeated loss of uncoupling protein 1 in amniotes
负责人:
关键词:
Gavia stellata;Canis familiaris;Haliaeetus albicilla;Balaenoptera acutorostrata;Anolis carolinensis;Picoides pubescens;Cuculus canorus;Pteropus vampyrus;Merops nubicus;Cavia porcellus;Struthio camelus australis;Pseudopodoces humilis;Aquila chrysaetos canadensis;Meleagris gallopavo;Serinus canaria;Procavia capensis;Sarcophilus harrisii;Tupaia belangeri;Zonotrichia albicollis;Buceros rhinoceros silvestris;Homo Sapiens;Dipodomys ordii;Papio anubis;Candoia aspera;Melopsittacus undulatus;Pan troglogdytes;Myotis lucifugus;Thamnophis couchii;Corvus cornix cornix;Sus scrofa;Sceloporus undulatus;Charadrius vociferus;Rattus norvegicus;Crocodylus porosus?;Alligator sinensis;Tauraco erythrolophus;Erinaceus europaeus;Microcebus murinus;Nipponia nippon;Xenopeltis unicolor;Ophiophagus hannah;Choloepus hoffmanni;Myotis brandtii;Dasypus novemcinctus;Tinamus guttatus;Pygoscelis adeliae;Orcinus orca;Tursiops truncatus;Phaethon lepturus;Phalacrocorax carbo;Falco cherrug;Alligator mississippiensis;Microtus ochrogaster;Tyto alba;heterocephalus glaber;Aptenodytes forsteri;Apaloderma vittatum;Macropus eugenii;Chlorocebus sabaeus;Cariama cristata;Egretta garzetta;Pterocles gutturalis;Agkistrodon piscivorus;Macaca mulatta;Felis catus;Physeter macrocephalus;Calypte anna;Gavialis gangeticus;Vicugna pacos;Elgaria multicarinata;Manacus vitellinus;Chaetura pelagica;Gallus gallus;Otolemur garnettii;Pelecanus crispus;turtle;Anolis sagrei;Bos taurus;Balearica regulorum gibbericeps;Chelonia mydas;thermogenesis;Sorex araneus;Ovis aries;Nestor notabilis;Mesitornis unicolor;Opisthocomus hoazin;Python molurus bivittatus;cetacean;Equus caballus;Chrysemys picta;Ficedula albicollis;Mus musculus;Ochotona princeps;Pogona vitticeps;Callithrix jacchus;Colius striatus;Leptosomus discolor;UCP1;Snake;Lamprophis fuliginosus;Anser cygnoides domesticus;Terrapene ornata;Gorilla gorilla;Oryctolagus cuniculus;Fulmarus glacialis;Corvus brachyrhynchos;Sternotherus odoratus;Taeniopygia guttata;Eublepharis macularius;Pongo abelii;Caprimulgus carolinensis;lizard;Monodelphis domestica;Haliaeetus leucocephalus;Mustela putorius;Pelodiscus sinensis;Pelusios castaneus;Chlamydotis macqueenii;Eurypyga helias;Ornithorhynchus anatinus;Columba livia;Loxodonta africana;Echinops telfairi;Falco peregrinus;Nomascus leucogenys;Geospiza fortis;Scincella lateralis;Thamnophis elegans;Tarsius syrichta;Ictidomys tridecemlineatus;Anas platyrhynchos;Ailuropoda melanoleuca;Cheyldra serpentina
DOI:
doi:10.5061/dryad.934fg
摘要:
of thermoregulation and energy metabolism in the absence of functional UCP1. Further, the repeated losses of a functional UCP1 suggest the pervasiveness of NST via UCP1
Data from: Adaptive admixture in the West African bovine hybrid zone: insight from the Borgou population
负责人:
关键词:
Genomics\/Proteomics;natural selection;Mammals;Contemporary Evolution;Adaptation
DOI:
doi:10.5061/dryad.281f2
摘要:
ween divergent ancestries has often been considered as an efficient short-term adaptation strategy. Cattle populations from the West African Bos taurus
Data from: Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer
负责人:
关键词:
black-tailed deer;exon capture;non-model taxa;population genomics;Odocoileus hemionus;hybridization
DOI:
doi:10.5061/dryad.pv18p
摘要:
w genomic resources are currently available for this species, we used exon data from a cattle (Bos taurus) reference genome to direct targeted resequencing
Data from: Wolbachia infection and dramatic intraspecific mitochondrial DNA divergence in a fig wasp
负责人:
关键词:
Horizontal transfer;Wolbachia;selective sweep;Ceratosolen solmsi;mitochondrial genome;gene rearrangements;Bos taurus;introgression
DOI:
doi:10.5061/dryad.475j7p93
摘要:
Mitochondria and Wolbachia are maternally inherited genomes that exhibit strong linkage disequilibrium in many organisms. We surveyed Wolbachia infections in 187 specimens of the fig wasp species, Ceratosolen solmsi, and found an infection prevalence of 89.3%. DNA Sequencing of 20 individuals each from Wolbachia-infected and uninfected sub-populations revealed extreme mtDNA divergence (up to 9.2% and 15.3% in CO1 and cytochrome b, respectively) between infected and uninfected wasps. Further, mtDNA diversity was significantly reduced within the infected group. Our sequencing of a large part of the mitochondrial genome from both Wolbachia-infected and uninfected individuals revealed that high sequence divergence is common throughout the mitochondrial genome. These patterns suggest a partial selective sweep of mitochondria subsequent to the introduction of Wolbachia into C. solsmi, by hybrid introgression from a related species.

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