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Data from: Adaptive evolution and divergent expression of heat stress transcription factors in grasses
负责人:
关键词:
cluster of orthologous genes expression divergence grass family heat stress transcription factors positive selection
DOI:
doi:10.5061/dryad.11243
摘要:
to handle increasing global temperatures. Results: In this work, we performed a genome-wide survey of Hsf genes in 5 grass species, including rice, maize
Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
负责人:
Cranston, Karen A.
关键词:
rice phylogenomics Oryza BAC-end sequencing missing data gene trees species trees
DOI:
doi:10.5061/dryad.1611
摘要:
sampling across many genes allows for both large concatenated data sets to improve genome-scale phylogenetic resolution and also for independent analysis
Data from: Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
负责人:
关键词:
rice epigenome transcriptome DNA methylation phosphate starvation nutrient stress
DOI:
doi:10.5061/dryad.40gd6
摘要:
e is known about the involvement of mC in response to environmental cues. Using whole genome bisulfite sequencing to assess the spatio-temporal dynamics of mC in rice grown under
Data from: Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement
负责人:
关键词:
rice genome-wide prediction genomics-assisted selection genome-wide association study modeling fixed effects
DOI:
doi:10.5061/dryad.vv28j
摘要:
s of a genome-wide-association study (GWAS) on the RR-BLUP training data. We term this model GS + de novo GWAS. In a breeding population of tropical rice, GS
Data from: WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress
负责人:
Wan, Jianmin
关键词:
RNA splicing RNA-seq WSL5 chloroplast biogenesis cold stress
DOI:
doi:10.5061/dryad.59185
摘要:
the functional characterization of white stripe leaf 5 (wsl5) mutant in rice. The mutant developed white-striped leaves during early leaf development and was albinic when planted
Data from: Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping
负责人:
Tester, Mark
关键词:
rice high-throughput phenotyping data analyses genome-wide association studies (GWAS) salinity quantitative trait locus (QTL)
DOI:
doi:10.5061/dryad.3118j
摘要:
high-density array. Two rice diversity panels, indica and aus, containing a total of 553 genotypes, are phenotyped in waterlogged conditions. Using cubic
Data from: Microbiome responses during virulence adaptation by a phloem-feeding insect to resistant near-isogenic rice lines
负责人:
关键词:
bacteria;symbionts;Endosymbionts;microbiome;Nephotettix virescens
DOI:
doi:10.5061/dryad.td3fb01
摘要:
patterns in adaptation by the green leafhopper, Nephotettix virescens, to near-isogenic rice lines (NILs) with one or two resistance genes
Data from: Genetic control of seed shattering during African rice domestication
负责人:
Zhu, Zuofeng
关键词:
Domestication Shattering
DOI:
doi:10.5061/dryad.qh5r649
摘要:
abscission layer. Moreover, selecting a genomic segment deletion containing SH3 resulted in the loss of seed dispersal in populations of African cultivated rice
Data from: Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice
负责人:
Choi, Jae Young
关键词:
retrotransposon epigenomics transposable element
DOI:
doi:10.5061/dryad.1q778
摘要:
sequence methylation, and 5) chromosomal location. Methylation spreading had negative effects by reducing host gene expression, but only on host genes
Data from: Patterns and evolution of nucleotide landscapes in seed plants
负责人:
Glémin, Sylvain
关键词:
Genome evolution GC content GC-biased gene conversion codon usage bias EST seed plants
DOI:
doi:10.5061/dryad.p12305b2
摘要:
s well known in plants. Most studies have focused on the GC-poor and homogeneous Arabidopsis genome and the much more GC-rich and heterogeneous rice (Oryza sativa) genome

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