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Data from: Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family
负责人:
关键词:
Tropical trees;Chrysobalanus icaco;Hirtella physophora;Licania sprucei;Next-generation sequencing;Hirtella racemosa;organellar genome;Licania alba;Licania heteromorpha;Parinari campestris;phylogenomics;Couepia guianensis
DOI:
doi:10.5061/dryad.78p90
摘要:
e able to assemble the nuclear ribosomal cluster (nrDNA), the complete plastid genome (ptDNA) and a large fraction of the mitochondrial genome (mtDNA) with approximate
Data from: Geneious! Simplified genome skimming methods for phylogenetic systematic studies: a case study in Oreocarya (Boraginaceae)
负责人:
关键词:
Geneious;NGS;Oreocarya;Boraginaceae;phylogenomics;genome skimming
DOI:
doi:10.5061/dryad.50536
摘要:
), nuclear ribosomal DNA (nrDNA), and mitochondrial DNA (mtDNA) are the target sequences. This study details methods that plant systematists can employ to study thei
Data from: Phylogeny of Salix subgenus Salix s.l. (Salicaceae): delimitation biogeography and reticulate evolution
负责人:
关键词:
Salix;reticulate evolution;Biogeography;Salix subgenus Salix;phylogeny;character evolution;Cenozoic;Salicaceae
DOI:
doi:10.5061/dryad.qr2vv
摘要:
l subgenera of Salix, and all sections of subgenus Salix s.l. Results Subgenus Salix came out as para- or polyphyletic in both nrDNA and plastid trees
Data from: A molecular gut content study of Themisto abyssorum (Amphipoda) from Arctic hydrothermal vent and cold seep systems
负责人:
关键词:
DHPLC Universal Primers 18s rDNA Trophic interactions
DOI:
doi:10.5061/dryad.tm1k0
摘要:
mud volcano) in the Nordic Seas were sampled, genomic DNA of the stomachs of T. abyssorum was extracted, and 18S rDNA gene was amplified and used to map
Data from: Intragenomic nuclear RNA variation in a cryptic Amanita taxon
负责人:
关键词:
Amanita afn. lavendula taxon 1;Amanita taxon 1;ribosomal RNA cistron.;concerted evolution;gene conversion;Amanita lavendula;fungal barcode;hybridization;Holocene
DOI:
doi:10.5061/dryad.42b68
摘要:
consistently unreadable nuclear rDNA ITS1-5.8S-ITS2 (fungal barcode) sequences after ITS1 base 130. This taxon is designated here as Amanita cf. lavendula taxon
Data from: Molecular and morphological phylogenetics of weevils (Coleoptera, Curculionoidea): do niche shifts accompany diversification?
负责人:
关键词:
larval habits;Curculionoidea;morphology;weevils;18s rDNA;phylogenetics;diversification;Curculionidae;host associations
DOI:
doi:10.5061/dryad.823
摘要:
of 18S ribosomal DNA (rDNA; ~2,000 bases) and 115 morphological characters of larval and adult stages. A worldwide sample of 100 species was compiled to maximize
Data from: Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms
负责人:
关键词:
parsimony;large data sets;phylogeny
DOI:
doi:10.5061/dryad.64
摘要:
and combined DNA data sets for 190 angiosperms and three outgroups. Separate data sets of 18S rDNA (1,855 bp), rbc L (1,428 bp), and atp B (1,450 bp) sequences
Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
负责人:
Lammers, Youri
关键词:
ancient DNA environmental DNA metabarcoding clitellates
DOI:
doi:10.5061/dryad.g0f4hv0
摘要:
ng a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23,000 and 14,000 cal
Data from: Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
负责人:
关键词:
Protists;Microbial Biology;molecular evolution;Community Ecology;Protista
DOI:
doi:10.5061/dryad.tv5v1v26
摘要:
on large subunit ribosomal DNA (LSU rDNA) fragments to assess the diversity from size-fractioned plankton samples collected in the Bay of Naples. One gr
Data from: Validity of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes) upheld in phylogenomic analysis
负责人:
关键词:
metacercaria;Diplostomoidea;Platyhelminthes;Strigeida;Hysteromorpha;Diplostomida;Cotylurus;Holocene;Nuclear-mitochondrial discordance;Alaria;phylogenomics
DOI:
doi:10.5061/dryad.7kj7t1q
摘要:
(rDNA) led to the erection of the Diplostomida Olson, Cribb, Tkach, Bray, and Littlewood, 2003. However, recent mitochondrial (mt) genome phylogenies sug

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