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Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing
负责人:
关键词:
multiplex PCR;systematics;Tephritidae;phylogenetics;Amplicon Sequencing;phylogenomics
DOI:
doi:10.5061/dryad.6524f
摘要:
-100-fold more loci than those generated using traditional Sanger-based approaches. Here, we demonstrate a new approach for building phylogenomic
Data from: Terrace aware data structure for phylogenomic inference from supermatrices
负责人:
关键词:
phylogenetic terraces;Supermatrix;partition models;maximum likelihood;phylogenomic inference;partial terraces
DOI:
doi:10.5061/dryad.v02t3
摘要:
In phylogenomics the analysis of concatenated gene alignments, the so-called supermatrix, is commonly accompanied by the assumption of partition
Data from: Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes
负责人:
关键词:
systematics;Serpentes
DOI:
doi:10.5061/dryad.rb5nc
摘要:
monophyly of Caenophidia, with Acrochordidae placed as the sister taxon to Pythonidae in some analyses. Thus, phylogenomic species-tree estimation ma
Data from: Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils
负责人:
关键词:
Curculionoidea;chronogram;hybrid enrichment;phylogenetics;Curculionidae;exon
DOI:
doi:10.5061/dryad.42d3b
摘要:
nes for representatives of all families of weevils and all subfamilies of Curculionidae. Most of our phylogenomic results had strong statistical support, and the inferred
Data from: Telling the whole story in a 10,000-genome world
负责人:
关键词:
Archaea;bacteria;Spirochaetes;Clostridia;Acidithiobacillus
DOI:
doi:10.5061/dryad.gf39c8dc
摘要:
e not alone sufficient to solve the analysis problem. A phylogenomic analysis of 1173 sequenced bacterial and archaeal genomes generated phylogenetic
Data from: Evolutionary dynamism in bryophytes: phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
负责人:
关键词:
organellar genome;Physcomitrium;Physcomitrella;Entosthodon;Funariaceae;targeted enrichment;high-throughput sequencing;Bryophyta;Physcomitrellopsis;Physcomitridium;Aphanorrhegma;Funaria
DOI:
doi:10.5061/dryad.78h27
摘要:
is marked by at least one burst of diversification, and our study thereby strengthens the view that bryophytes are evolutionarily dynamic lineages and tha
Data from: Conserved genes, sampling error, and phylogenomic inference
负责人:
关键词:
Sampling error;Incongruence;Yeast;Systematic error;Strong phylogenetic signal;phylogenomics;Slowly-evolving genes
DOI:
doi:10.5061/dryad.157d7
摘要:
benefits, pitfalls, and best practices associated with phylogenomic approaches (Jeffroy, O., Brinkmann, H., et al. 2006, Philippe, H., Derelle, R., et al
Data from: A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mi
负责人:
关键词:
Mesodinium;Litostomatea;ciliate phylogenomics;mixed-species transcriptomes;sequence contamination
DOI:
doi:10.5061/dryad.zw3r22848
摘要:
phylogenomic studies that exploited the same transcriptomic databases.? These topological discrepancies illustrate the need for caution when mining mixed-species
Data from: A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mi
负责人:
关键词:
Mesodinium;Litostomatea;ciliate phylogenomics;mixed-species transcriptomes;sequence contamination
DOI:
doi:10.5061/dryad.n02v6wwsg
摘要:
phylogenomic studies that exploited the same transcriptomic databases.? These topological discrepancies illustrate the need for caution when mining mixed-species

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