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Data from: SuperFine: fast and accurate supertree estimation
负责人:
关键词:
Algorithms;supertrees;Simulation;maximum likelihood;phylogenetics;MRP
DOI:
doi:10.5061/dryad.879st
摘要:
n a few thousand sequences. Supertree methods, which assemble phylogenetic trees from a collection of trees on subsets of the taxa, are important tools
Data from: Pan-genome and phylogeny of Bacillus cereus sensu lato
负责人:
关键词:
Bayesian model-based clustering;Bacillus cereus group;Bacillus cereus;Bacillus cereus sensu lato;Pan-genome;phylogenetic clustering;Bacillus;phylogenetics;Pan-GWAS;phylogeny
DOI:
doi:10.5061/dryad.dm82j
摘要:
based approach (Mash) was used to create reduced representations of selected Bacillus genomes, and a fast distance-based phylogenetic analysis
Data from: Multilocus phylogenetic analyses of Hispaniolan and Bahamian trunk anoles (distichus species group)
负责人:
关键词:
Bark anoles;Anolis marron;Dewlap;Anolis websteri;Anolis altavelensis;Anolis brevirostris;phylogeny;Anolis caudalis;Anolis distichus
DOI:
doi:10.5061/dryad.622h6
摘要:
hus species group. We use these phylogenetic trees to address three topics about the group’s evolution. First, we consider longstanding taxonomic controversies
Data from: Altitudinal biodiversity patterns of seed plants along Gongga Mountain in the southeastern Qinghai-Tibetan Plateau
负责人:
关键词:
DOI:
doi:10.5061/dryad.739sh81
摘要:
in evergreen broad-leaved forests had phylogenetically random structure. Both climate and human pressure had strong correlation with species diversity, phylogenetic
Data from: The influence of historical dispersal on the phylogenetic structure of tree communities in the tropical Andes
负责人:
关键词:
Tropical Niche conservatism.;Phylogenetic replacement;Out of the Tropics
DOI:
doi:10.5061/dryad.4fp2t08
摘要:
with phylogenetic information, we analyzed: 1) patterns of phylogenetic dispersion and species diversity along the elevational gradient based on indexes of net relatednes
Data from: Using supermatrices for phylogenetic inquiry: an example using the sedges
负责人:
关键词:
Paleocene;decisiveness;diversitree;Eocene;Cretaceous;mega-phylogeny;BiSSE;latitudinal diversity gradient;Pliocene;phlawd;Supermatrix;Oligocene;Cyperaceae;Miocene;Holocene;Pleistocene
DOI:
doi:10.5061/dryad.6p76c3pb
摘要:
le on GenBank. We explore the properties of these trees and their utility for phylogenetic inference, and show that even the highly incomplete alignments
Data from: Non-random patterns of invasion and extinction reduce phylogenetic diversity in island bird assemblages
负责人:
关键词:
1500 to present;oceanic islands;Avian extinction;phylogenetic diversity;1500 CE to 2017 CE
DOI:
doi:10.5061/dryad.rs714
摘要:
it to the expected phylogenetic diversity that would result if these processes involved randomly selected island bird species. We assessed phylogenetic
Data from: Weak phylogenetic signal in physiological traits of methane-oxidizing bacteria
负责人:
关键词:
Traits Phylogenomics Methane oxidation Modeling Horizontal gene transfer Microorganisms
DOI:
doi:10.5061/dryad.6f27f
摘要:
methane-oxidizing bacteria (MOB). We generated a comprehensive data set that included 30 MOB strains with quantitative physiological trait information. Phylogenetic trees wer
Data from: The future of evolutionary diversity in reef corals
负责人:
关键词:
ecoregions;tree shape;Extinction risk;phylogenetic diversity;Coral reef;Scleractinia
DOI:
doi:10.5061/dryad.178n3
摘要:
orly known. In this study, we use phylogenetic metrics in conjunction with geographical distributions of living reef coral species to model how extinctions are li
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
负责人:
关键词:
Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
DOI:
doi:10.5061/dryad.r8q72
摘要:
heterozygous sequences do not contribute disproportionately to poor phylogenetic resolution and that the use of allele sequences for phylogeny reconstruction does

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