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Data from: Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
负责人:
关键词:
gene flow;polyploidy;cytonuclear discordance;Rosaceae;Lachemilla;hybridization;species trees;introgression;phylogenetic networks
DOI:
doi:10.5061/dryad.vj2s888
摘要:
for phylogenetic reconstruction. Here, we use sequence capture data and multiple species tree and species network approaches to resolve the backbone phylogeny of the Neotropical
Data from: Hierarchical Hybrid Enrichment: multi-tiered genomic data collection across evolutionary scales, with application to chorus frogs
负责人:
关键词:
data filtering;Anchored Hybrid Enrichment;heat map;phylogenetic robustness;reproductive character displacement;population genomics;contact zone;reinforcement;hybridization;phylogeography
DOI:
doi:10.5061/dryad.0sf2hm8
摘要:
for evolutionary biologists. Of the available methods for sub-sampling the genome, hybrid enrichment (sequence capture) has become one of the primary mea
Data from: Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer
负责人:
关键词:
black-tailed deer;exon capture;non-model taxa;population genomics;Odocoileus hemionus;hybridization
DOI:
doi:10.5061/dryad.pv18p
摘要:
capture techniques has identified a suite of loci that can be used in future research to investigate the genomic basis of adaptation and differentiation bet
Data from: Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
负责人:
关键词:
Araneomorphae;Arachnida;Mygalomorphae;Aphonopelma;Conserved regions;ultraconserved elements;Araneae;Aptostichus;Anchored phylogenomics;targeted sequence capture;Anchored Hybrid Enrichment
DOI:
doi:10.5061/dryad.5027d
摘要:
eby hindering family-level resolution, classification, and testing of important macroevolutionary hypotheses. Recently, alternative targeted sequence capture
Data from: A framework for resolving cryptic species: a case study from the lizards of the Australian Wet Tropics
负责人:
关键词:
Exome Capture;species delimitation;squamates;taxonomy;cryptic species;phylogeography
DOI:
doi:10.5061/dryad.g7v1b
摘要:
. By integrating genomic and morphological data with data on hybridization and introgression from contact zones, we explore several approaches – and their relative
Data from: Squamate Conserved Loci (SqCL): a unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
负责人:
Singhal, Sonal
关键词:
target capture phylogenomics comparative population genomics squamate reptiles Reptiles
DOI:
doi:10.5061/dryad.r0q02
摘要:
design. Target capture for vertebrate animals is currently dominated by two approaches – anchored hybrid enrichment (AHE) and ultraconserved elements (UCE
Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
负责人:
关键词:
Species tree;Concatenation;ultraconserved elements;phylogeny;SVD quartets;Phrynosomatidae;systematics;coalescent;Phrynosoma
DOI:
doi:10.5061/dryad.82p92
摘要:
oughout the genome. In this study, we use targeted sequence capture (TSC) data from 540 ultraconserved elements and 44 protein-coding genes to estimate
Data from: Parallel evolution of gene classes, but not genes: evidence from Hawai’ian honeycreeper populations exposed to avian malaria
负责人:
关键词:
amakihi;disease resistance;Chlorodrepanis virens;Adaptation;outliers;Hawai'ian honeycreepers;Holocene
DOI:
doi:10.5061/dryad.hs5jt80
摘要:
the island of Hawai’i via hybridization capture to 40,000 oligonucleotide baits containing SNPs, and used the reference ‘amakihi genome to identify genes pote

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