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Data from: Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
负责人:
关键词:
Actinopterygii;Cichlidae;Eocene;Cretaceous;Homoplasy;Jurassic;Devonian;Triassic;Acanthomorpha;Nucleotide Saturation;Cenozoic;Tetraodontiformes;Teleostei;molecular clock
DOI:
doi:10.5061/dryad.3rq51
摘要:
Discordance among individual molecular age estimates, or between molecular age estimates and the fossil record, is observed in many clades ac
Data from: Hybridization could be a common phenomenon within the highly diverse lizard genus Liolaemus
负责人:
关键词:
gene flow;Coalescence;incomplete lineage sorting;model-based approach;hybridization;lizards
DOI:
doi:10.5061/dryad.fm0g3m5
摘要:
for approaching the hybridization hypothesis between these lizard species complexes. We explored the level of gene tree discordance using the novel “extra lineage
Data from: Evolutionary basis of mitonuclear discordance between sister species of mole salamanders (Ambystoma sp.)
负责人:
关键词:
Amphibians Hybridization Species Interactions Adaptation
DOI:
doi:10.5061/dryad.n0r41
摘要:
the putative mitonuclear discordance observed between sister species of mole salamanders (Ambystoma barbouri and A. texanum) in which A. barbouri-specific mtDNA
Data from: Asymmetric introgression in a spotted salamander hybrid zone
负责人:
关键词:
mitonuclear discordance;Cline;hybrid zone;Ambystoma maculatum;Population structure and phylogeography;hybridization;Mate choice;Molecular adaptation and selection
DOI:
doi:10.5061/dryad.v23r2
摘要:
biogeographic structure. Discordance in the biogeographic patterns of autosomal and maternally inherited loci provides a useful window to infer the proce
Data from: Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
负责人:
关键词:
Cactaceae;hemiplasy;Lophocereus schottii;lineage sorting;Pereskia humboldtii;Carnegiea gigantea;Pachycereus pringlei;Stenocereus thurberi
DOI:
doi:10.5061/dryad.72c2g
摘要:
gene alignments. Species tree inference consistently returned the same phylogeny, but gene tree discordance was high: 37% of gene trees having at least 90
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
负责人:
关键词:
supertree methods;incomplete lineage sorting;Concatenation;species tree estimation;MRL;MRP;multilocus bootstrapping;gene tree estimation error;MP-EST;gene tree discordance
DOI:
doi:10.5061/dryad.310q3
摘要:
Species tree estimation is complicated by processes, such as gene duplication and loss and incomplete lineage sorting (ILS), that cause discordance
Data from: Multiple cases of asymmetric introgression among horseshoe bats detected by phylogenetic conflicts across loci
负责人:
关键词:
gene flow;R. thomasi;R. rouxii;phylogenetic discordance;reproductive isolation;Pleistocene;Rhinolophus sinicus
DOI:
doi:10.5061/dryad.sd60p
摘要:
Phylogenetic discordance among taxa can provide powerful insights into past episodes of introgressive hybridization, as well as lineage sorting. Pr
Data from: Exploring tree-like and non-tree-like patterns using genome sequences: an example using the inbreeding plant species Arabidopsis thaliana
负责人:
关键词:
Arabidopsis thaliana;species concept;TICR;quartet;gene tree discordance;concordance;Arabidopsis lyrata
DOI:
doi:10.5061/dryad.q044d
摘要:
alogical history. As expected from accessions of the same species, we found much discordance between nuclear gene trees. Nonetheless, we inferred the optimal
Data from: Inferring introgression using RADseq and DFOIL: power and pitfalls revealed in a case study of spiny lizards (Sceloporus)
负责人:
关键词:
ABBA-BABA;hybridization;D-statistics;mito-nuclear discordance;batch effects
DOI:
doi:10.5061/dryad.s5t3vm8
摘要:
discordance. We then test for nuclear introgression by exhaustively applying the “five?taxon” D?statistic (DFOIL) to all relevant individuals sampled for RADseq

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