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Data from: The multispecies coalescent model outperforms concatenation across diverse phylogenomic
负责人:
关键词:
Bayesian model validation;coalescent prior;congruent gene trees;independent prior;Bayes factor;Athens;posterior predictive simulation;Metazoa
DOI:
doi:10.5061/dryad.7q6q3s0
摘要:
atenation assumption of congruent gene trees is consistently observed across 6 major groups (birds, mammals, fish, insects, reptiles, and others, including other
Data from: A congruent phylogenomic signal places eukaryotes within the Archaea.
负责人:
关键词:
eukaryotes;Eukaryota;Archaea;phylogenetics;bacteria;Evolution
DOI:
doi:10.5061/dryad.0hd1s
摘要:
sampling of archaeal biodiversity. We also employed both new and existing tests of phylogenetic congruence to explore the level of uncertainty and conflict
of a novel position of the non-photosynthetic Orobanche clade sister to all other parasitic Orobanchaceae
负责人:
关键词:
PPR genes;Orobanchaceae;phylogeny;parasitic plants;low-copy nuclear genes
DOI:
doi:10.5061/dryad.31cf160
摘要:
, the Euphrasia-Rhinanthus clade, and the Castilleja-Pedicularis clade, were uncertain because of strongly supported incongruence also among well-resolving
Data from: Limitations of climate data for inferring species boundaries: insights from speckled rattlesnakes
负责人:
关键词:
integrative taxonomy;Crotalus pyrrhus;Crotalus mitchellii;Crotalus tigris;species delimitation;Recent;Species tree;Crotalus stephensi;Model-based Clustering;Crotalus angelensis;dd-RADseq;Holocene;speciation
DOI:
doi:10.5061/dryad.2rg12
摘要:
for physiological tolerances adds artificial weight to evidence of species boundaries, as these data are irrelevant for that purpose. Based on the evidence from congruent
Data from: The more, the better: the use of multiple landmark configurations to solve the phylogenetic relationships in Musteloids
负责人:
关键词:
DOI:
doi:10.5061/dryad.26m66
摘要:
information in landmark data has been challenged, since phylogenetic analyses have often shown little congruence with alternative sources of evidence. However, mos
Data from: Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling
负责人:
关键词:
Neoaves;Non-coding DNA;Coding exons;GTR model;model fit;Birds;taxon sampling;Neornithes;Cenozoic;phylogenomics
DOI:
doi:10.5061/dryad.6536v
摘要:
reased taxon sampling actually resulted in increased congruence with the tree from the previous taxon-poor study (which had a majority of non-coding data) instea
Data from: Methods for the quantitative comparison of molecular estimates of clade age and the fossil record
负责人:
关键词:
Nothofagus;Sphenisciformes;Ostracoda
DOI:
doi:10.5061/dryad.0vk92
摘要:
Approaches quantifying relative congruence, or incongruence, of molecular divergence estimates and the fossil record have been limited. Pr
Data from: Verbalizing phylogenomic conflict: representation of node congruence across competing reconstructions of the neoavian explosion
负责人:
关键词:
Big data integration;systematics;synthesis;conflict;Database design;Evolution;Extant;Aves;Logic representation and reasoning;phylogenomics
DOI:
doi:10.5061/dryad.8206227
摘要:
r, the ability to verbalize node concept congruence and conflict across multiple, in effect simultaneously endorsed phylogenomic hypotheses, is a prerequisi
Data from: Lost in the other half: improving accuracy in geometric morphometric analyses of one side of bilaterally symmetric structures
负责人:
关键词:
Allometry landmarks macro-evolution micro-evolution mirror-reflection object symmetry shape visualization
DOI:
doi:10.5061/dryad.mr2mh
摘要:
, never been explored. Using two example data sets, I will show that congruence may be high in analyses at a macroevolutionary level but much lower

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