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Data from: Increased novel single nucleotide polymorphisms in weedy rice populations associated with the change of farming styles: Implications in adaptive mutation and evolution
- 负责人：
- Lu, Baorong
- DOI：
- doi:10.5061/dryad.2sn57
- 摘要：
- Substantial genetic variation is found in weedy rice (Oryza sativa f. spontanea Roshev.) populations from different rice-planting regions
Data from: Independent and parallel evolution of new genes by gene duplication in two origins of C4 photosynthesis provides new insight into the mechanism of phloem loading in C4 species
- 负责人：
- DOI：
- doi:10.5061/dryad.17m42
- 摘要：
- C4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes is enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Furthermore, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species.
Data from: Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice
- 负责人：
- Choi, Jae Young
- DOI：
- doi:10.5061/dryad.1q778
- 摘要：
- ) retrotransposons (RTs) in Oryza sativa. Results showed significant evidence of methylation spreading originating from the LTR-RT sequences, and the extent
Data from: Genetic control of seed shattering during African rice domestication
- 负责人：
- Zhu, Zuofeng
- 关键词：
- Domestication Shattering
- DOI：
- doi:10.5061/dryad.qh5r649
- 摘要：
- (Oryza glaberrima Steud.). Functional characterization of SH3 and SH4 (another gene controlling seed shattering on chromosome 4) revealed that multiple genes can lead
Data from: Conserved genetic regions across angiosperms as tools to develop single copy nuclear markers in gymnosperms: an example using cycads
- 负责人：
- DOI：
- doi:10.5061/dryad.k2f0n
- 摘要：
- and, 2) a tblastX search of Arabidopsis-Populus-Vitis-Oryza Shared Single Copy genes (APVO SSC) against the EST Zamia databases in Genbank. From the first strategy
Data from: Fertilizer application effects on grain and storage root nutrient concentration
- 负责人：
- Charles Wortmann
- DOI：
- doi:10.5061/dryad.pj76g30
- 摘要：
- concentrations for N, Ca, Mg, S, Zn, Cu, and B. Bean (Phaseolus vulgaris L.), maize and rice (Oryza sativa L.) grain concentrations were reduced by MgSZnB for N, K, S, Cu, Mn
Data from: Leaf economics spectrum in rice: Leaf anatomical, biochemical and physiological trait trade-offs
- 负责人：
- Xiong, Dongliang
- 关键词：
- Leaf economics spectrum mesophyll conductance mesophyll structure nitrogen photosynthesis photosynthetic limitation
- DOI：
- doi:10.5061/dryad.6060q21
- 摘要：
- and functional traits, was constructed to evaluate the trait covariations and trade-offs in domesticated species, rice (Oryza sp.). The slopes and intercepts of the major
Data from: Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life-cycle in field-grown rice
- 负责人：
- Sundaresan, Venkatesan
- DOI：
- doi:10.5061/dryad.7q7k1
- 摘要：
- the bacterial and archaeal components of the root-associated microbiota of field grown rice (Oryza sativa) over the course of three consecutive growing season
Data from: Transgenes for insect resistance reduce herbivory and enhance fecundity in advanced generations of crop-weed hybrids of rice
- 负责人：
- Lu, Baorong
- 关键词：
- Biosafety risk assessment Biotechnology weediness competition red rice genetically engineered introgression
- DOI：
- doi:10.5061/dryad.8974
- 摘要：
- the fitness of weeds, but few studies have tested for these effects under natural field conditions. We created F2 and F3 crop-weed hybrid lineages of genetically engineered rice (Oryza
Data from: Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis)
- 负责人：
- 关键词：
- garden asparagus;dioecy;RNA-seq;garden asparagus;transcriptome;sex chromosome;Asparagus officinalis
- DOI：
- doi:10.5061/dryad.92c60
- 摘要：
- development that were specifically expressed in males and supermales. Comparative analysis of genes in the Arabidopsis thaliana, Zea mays and Oryza
