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Data from: Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application
负责人:
关键词:
Species tree;cytonuclear discordance;Target Enrichment;low-copy nuclear genes;Oxalis;genome skimming
DOI:
doi:10.5061/dryad.dn08t
摘要:
Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, suc
Data from: Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae)
负责人:
关键词:
saturation;partitioned Bremer support;Incongruence;Nuclear Genes;Diopsidae
DOI:
doi:10.5061/dryad.612
摘要:
, faster-evolving characters in both the nuclear and mitochondrial data sets still provide substantial phylogenetic signal. In general, inclusion of the mor
Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning
负责人:
关键词:
Multispecies coalescent;nuclear single-copy genes;in-silico cloning;polyploidy;Hordeum;phylogeny;Evolution;systematics
DOI:
doi:10.5061/dryad.fn2nt
摘要:
reads were assembled into contigs representing the 13 loci and, for polyploids, also homoeologues. Phylogenetic analyses were conducted for all loci
Data from: Validity of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes) upheld in phylogenomic analysis
负责人:
关键词:
metacercaria;Diplostomoidea;Platyhelminthes;Strigeida;Hysteromorpha;Diplostomida;Cotylurus;Holocene;Nuclear-mitochondrial discordance;Alaria;phylogenomics
DOI:
doi:10.5061/dryad.7kj7t1q
摘要:
Higher systematics within the Digenea, Carus 1863 have been relatively stable since a phylogenetic analysis of partial nuclear ribosomal mar
Data from: Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae)
负责人:
关键词:
polyploidy;Orchidaceae;monocot;genome evolution;Cypripedioideae;genome size;phylogenomics;phylotranscriptomics
DOI:
doi:10.5061/dryad.5gd00
摘要:
existing RNA-seq data to infer a multi-locus nuclear phylogeny of the Cypripedioideae and to determine if a whole genome duplication event (WGD) correlated
Data from: Complex phylogeography in Rhinoclemmys melanosterna: conflicting mitochondrial and nuclear evidence suggests past hybridization
负责人:
关键词:
Rhinoclemmys diademata;Rhinoclemmys funerea;molecular phylogeny;mtDNA;Rhinoclemmys punctularia;nDNA;Holocene;Rhinoclemmys melanosterna;phylogeography
DOI:
doi:10.5061/dryad.q9s30
摘要:
R. diademata, R. funerea and R. punctularia, based on 1060 base pairs of the mitochondrial cyt b gene. We also assessed the phylogenetic relationships amo
Data from: Species tree estimation of North American chorus frogs (Hylidae: Pseudacris) with parallel tagged amplicon sequencing
负责人:
关键词:
reduced representation library;Pseudacris;anonymous nuclear locus;phylogenetics;targeted amplicon sequencing;high-throughput sequencing
DOI:
doi:10.5061/dryad.23rc0
摘要:
of this technology for phylogenetic studies, which often include a relatively small portion of the genome but several taxa, requires strategies for genome par
Data from: Developing nuclear DNA phylogenetic markers in the angiosperm genus Leucadendron (Proteaceae): a next-generation sequencing transcriptomic
负责人:
关键词:
Leucadendron spissifolium subsp. spissifolium;Leucadendron chamelaea;Leucadendron burchelli;Leucadendron rubrum;Leucadendron flexuosum;Leucadendron lanigerum var. laevigatum;Leucadendron dubium;Leucadendron sericeum;RNA-seq;Leucadendron brunioides var. brunioides;phylogenetic markers;Leucadendron roodii;Leucadendron elimense subsp. salteri;Leucadendron elimense subsps. alteri;Leucadendron meridianum;Proteaceae;Leucadendron sessile;Leucadendron muirii;Mimetes cucullatus;Leucadendron spissifolium subsp. fragrans;Leucadendron stellare;Leucadendron osbornei;Leucadendron dregei;Leucadendron platyspermum;Leucadendron conicum;Leucadendron discolor;Leucadendron laureolum;Leucadendron singulare;Leucadendron elimense subsp. vyeboomense;Leucadendron meyerianum;Leucadendron nervosum;Leucadendron barkerae;Leucadendron ericifolium;Leucadendron floridum;3'-UTR;Non-models groups;Leucadendron loeriense;Leucadendron microcephalum;Leucospermum erubescens;Leucadendron verticillatum;orthology;Leucadendron album;Leucadendron thymifolium;Leucadendron modestum;Leucadendron corymbosum;Paranomus spathulatus;Leucadendron nitidum;Leucadendron glaberrimum subsp. glaberrimum;Leucadendron loranthifolium
DOI:
doi:10.5061/dryad.tp5g2
摘要:
e of a number of independent genes is required to resolve phylogenetic relationships, especially for groups displaying low polymorphism. In such cases, low-copy
Data from: Phylogenomics of horned lizards (genus: Phrynosoma) using targeted sequence capture data
负责人:
关键词:
Species tree;Concatenation;ultraconserved elements;phylogeny;SVD quartets;Phrynosomatidae;systematics;coalescent;Phrynosoma
DOI:
doi:10.5061/dryad.82p92
摘要:
the phylogenetic relationships among all 17 species of horned lizards in the genus Phrynosoma. Previous molecular phylogenetic analyses of Phrynosoma based on a few nuclear ge

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