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Data from: The shape of modern tree reconstruction methods
负责人:
关键词:
bayesian analysis;tree shape;parsimony;maximum likelihood
DOI:
doi:10.5061/dryad.22d26
摘要:
of phylogenetic trees, inferred tree shapes can be compared to expectations under probabilistic models of speciation and extinction in an attempt to ma
Data from: Posterior predictive checks of coalescent models: P2C2M, an R package
负责人:
关键词:
Multispecies coalescent;phylogeography;species trees;posterior predictive simulation
DOI:
doi:10.5061/dryad.n715n
摘要:
h is in violation with the coalescent model: Tamias chipmunks and Myotis bats. Our results indicate that (i) probability-based summary statistics display the lowest
Data from: Probabilistic species tree distances: implementing the multispecies coalescent to compare species trees within the same model-ba
负责人:
关键词:
Multispecies coalescent;Species tree;model comparison;Information theory;phylogenetic distances;phylogenetic networks
DOI:
doi:10.5061/dryad.rh4172f
摘要:
der gene trees and associated parameters as probabilistic models that can be compared using standard information theoretic approaches. Consequently, probabilistic measures
Data from: Establishment and maintenance of adaptive genetic divergence under migration, selection, and drift
负责人:
关键词:
gene flow;local adaptation;environmental heterogeneity;genetic drift;migration-selection balance;Dispersal
DOI:
doi:10.5061/dryad.8651
摘要:
of polymorphism, but this has yet to be explored in detail. Here, classical two-patch models are extended to predict: i) the probability of a locally benefic
Data from: Assessing the joint behavior of species traits as filtered by environment
负责人:
关键词:
Restio;Pelargonium;Erica;Protea;community assembly
DOI:
doi:10.5061/dryad.2vk03
摘要:
ons for environments while incorporating intra-taxon trait variability. Explicit details on the probabilistic interpretations of the random trait-by-environment matric
Data from: A hidden Markov model to identify and adjust for selection bias: an example involving mixed migration strategies
负责人:
关键词:
winter severity;Bayesian;white-tailed deer;Migration;state-space;partially observed state;latent variable;1991-2006;Odocoileus virginianus
DOI:
doi:10.5061/dryad.4430n
摘要:
on probabilities simultaneously with other predictor–response relationships or by weighting observations by inverse selection probabilities. We illustrate
Data from: Evaluating the efficacy of independent versus simultaneous management strategies to address ecological and genetic threats
负责人:
关键词:
conservation management planning;gene flow;Pyrrhocorax pyrrhocorax;extinction probability;inbreeding-environment interactions;conservation intervention;Corvid;population persistence;population reinforcement
DOI:
doi:10.5061/dryad.2h3qj2r
摘要:
is limiting stochastic population growth rate (?s), while translocations may be ineffective if food is limiting. 3. Model simulations suggested that the focal
Data from: Cladogenetic and anagenetic models of chromosome number evolution: a Bayesian model averaging approach
负责人:
关键词:
anagenetic;Dysploidy;polyploidy;Bayes factors;ChromoSSE;phylogenetic models;whole genome duplication;chromosome evolution;reversible-jump Markov chain Monte Carlo;chromosome speciation;cladogenetic
DOI:
doi:10.5061/dryad.46m4b
摘要:
on. The recent development of probabilistic models of chromosome number evolution in the groundbreaking work by Mayrose et al. (2010, ChromEvol) have enabled the inference
Data from: Evolutionary branching in complex landscapes
负责人:
关键词:
competition;Speciation: ecological;Modeling: spatial;Theory;Dispersal;Modeling: individual based;Methods: computer simulations;Adaptation;Selection: natural
DOI:
doi:10.5061/dryad.43cj7
摘要:
le environments provide opportunities for colonization, thus increasing the probability of branching in patchy landscapes. Effects of patchiness depend on the scale
Data from: Bayesian estimation of genomic clines
负责人:
关键词:
Bayesian inference;hybridization;Population Genetics - Theoretical;speciation
DOI:
doi:10.5061/dryad.8623
摘要:
lineages. This model quantifies locus-specific patterns of introgression with two cline parameters that describe the probability of locus-specific ancestry

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