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Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
负责人:
关键词:
supertree methods;incomplete lineage sorting;Concatenation;species tree estimation;MRL;MRP;multilocus bootstrapping;gene tree estimation error;MP-EST;gene tree discordance
DOI:
doi:10.5061/dryad.310q3
摘要:
. Our study suggests that coalescent-based species tree methods may be key to estimating highly accurate species trees from multiple loci.
Data from: Species tree reconstruction of a poorly resolved clade of salamanders (Ambystomatidae) using multiple nuclear loci
负责人:
关键词:
Bayesian;Ambystoma;Gene tree;coalescent;Species tree
DOI:
doi:10.5061/dryad.2gq14
摘要:
DNA sequence-based phylogenetic study of the Ambystomatidae. We utilized a range of analyses, including coalescent-based methods of species-tree estimation tha
Data from: A new monster from southwest Oregon forests: Cryptomaster behemoth sp. n. (Opiliones, Laniatores, Travunioidea)
负责人:
关键词:
Bayes factor delimitation;Short-Range Endemic;DNA Barcoding;cryptic species
DOI:
doi:10.5061/dryad.76rb1
摘要:
on approaches to generate and test species hypotheses, including a coalescent species delimitation method to test multi-species hypotheses. For delimited species
Data from: Hidden diversity within the lizard genus Liolaemus: genetic vs morphological divergence in the L. rothi complex (Squamata:Liolaeminae)
负责人:
关键词:
Species tree;divergence times;ibpp;Liolaemus
DOI:
doi:10.5061/dryad.3g141
摘要:
), that represent all six described species of the L. rothi complex, plus two candidate species. We use the multi-coalescent species delimitation program
Data from: Pleistocene speciation with and without gene flow in Euphaea damselflies of subtropical and tropical East Asian islands
负责人:
关键词:
systematics;insects;Euphaea ornata;phylogeography;Evolutionary Theory;Euphaea decorata;Euphaea yayeyamana;Euphaea formosa;speciation;Population Genetics - Empirical;Pleistocene
DOI:
doi:10.5061/dryad.68s5c1r4
摘要:
on of allopatric isolation and inter-population gene flow cycles. However, whether tropical speciation involves strictly allopatric isolation, or proceeds in the face
Data from: A time-calibrated species tree of Crocodylia reveals a recent radiation of the true crocodiles
负责人:
关键词:
Species tree;Crocodylia;multi-species coalescent;Biogeography;phylogenetics
DOI:
doi:10.5061/dryad.5k9s0
摘要:
of Crocodylus are tested using DNA sequence data of 10 loci from 76 individuals representing all 23 crocodylian species. I infer a time-calibrated species
Data from: Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian
负责人:
关键词:
Teleosts;Ariidae;molecular clock;fossil record;Dorylinae;SNPs;phylogeny;Miocene;Bayesian inference;Pliocene;RAD sequencing;Pleistocene
DOI:
doi:10.5061/dryad.f8k84
摘要:
populations before the isthmus closure around 3 Ma. Our reanalysis with the multi-species coalescent model shifts all of these divergence times to ages younge
Data from: A coalescent-based estimator of genetic drift, and acoustic divergence in the Pteronotus parnellii species complex
负责人:
关键词:
PST;Pteronotus pusillus;adaptive vs. non-adaptive;Echolocation;Quaternary;FST;phenotypic divergence;isolation-with-migration;Pteronotus portoricensis;Holocene;Pteronotus parnellii;Pleistocene
DOI:
doi:10.5061/dryad.fg53g0j
摘要:
c drift. Here we derive FST values from multi-locus coalescent isolation-with-migration models, and couple them with estimates of quantitative trait divergence

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