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Data from: Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assess
- 负责人：
- DOI：
- doi:10.5061/dryad.3t3n7
- 摘要：
- ), technological processing (sequencing error ?, library normalization) and bioinformatic workflow (de novo vs. mapping assembly, reference genome quality) impact
De novo transcriptome assembly of the mountain fly Drosophila nigrosparsa using short RNA-seq reads" in Genomic Resources Notes Accepted" data-category="" data-cropid="" data-dimen="" data-id="b30896ec-f979-11ea-ae96-0242ac110002"> Data from: "De novo transcriptome assembly of the mountain fly Drosophila nigrosparsa using short RNA-seq reads" in Genomic Resources Notes Accepted
- 负责人：
- DOI：
- doi:10.5061/dryad.0mv56
- 摘要：
- high-throughput sequencing to assemble the species’ transcriptome using the pooled mRNA from 22 developmental and physiological stages.
Data from: De novo transcriptome assembly and polymorphism detection in two highly divergent evolutionary units of Bosca's newt (Lissotriton boscai
- 负责人：
- DOI：
- doi:10.5061/dryad.gp5j0
- 摘要：
- we provide include the raw sequence reads, the assembled transcripts and SNPs called for both lineages.
Data from: De novo assembly of a chromosome-level reference genome of red spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C
- 负责人：
- DOI：
- doi:10.5061/dryad.4398b9f
- 摘要：
- reference genome of E. akaara by taking advantage of long-read single molecule sequencing and de novo assembly by Oxford Nanopore Technologies (ONT
Data from: A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome se
- 负责人：
- Pérez-Porro, Alicia R.
- 关键词：
- Crella elegans de novo assembly transcriptome characterization Mediterranean sponge life cycle stages
- DOI：
- doi:10.5061/dryad.50dc6
- 摘要：
- and tissue with larvae. The fourth assembly pooled the data from all three stages. By aggregating data from all the different life cycle stages we obtaine
Data from: Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes
- 负责人：
- DOI：
- doi:10.5061/dryad.q70q40m
- 摘要：
- The number of de novo genome sequence assemblies is increasing exponentially; however, relatively few contain one scaffold/contig per chromosome. Suc
Data from: Reference-free transcriptome assembly in non-model animals from next generation sequencing data
- 负责人：
- Cahais, Vincent
- DOI：
- doi:10.5061/dryad.5g32f94b
- 摘要：
- ropriate reference. Analyses showed that (i) the highest quality assemblies are obtained when 454 and Illumina data are combined, (ii) typical de novo assemblies inc
Data from: Genome assembly of the ragweed leaf beetle, a step forward to better predict rapid evolution of a weed biocontrol agent to environmental
- 负责人：
- DOI：
- doi:10.5061/dryad.1ns1rn8qt
- 摘要：
- ng the five different assemblers tested, the SMARTdenovo assembly displaying the best scores was then corrected with Illumina short reads. A final genome of 774
Data from: AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data
- 负责人：
- DOI：
- doi:10.5061/dryad.sn034
- 摘要：
- and experimental data sets to evaluate AftrRAD's ability to perform accurate de novo assembly of loci, and we compare its performance with two other commonly use
assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n=50)"" data-category="" data-cropid="" data-dimen="" data-id="AB356D61-05BC-48D1-8E88-E862E74444CD"> Supporting data for "Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n=50)"
- 负责人：
- DOI：
- doi:10.5524/100333
- 摘要：
- Water buffalo is a globally important species for agriculture and local economies. A de novo assembled, well annotated, reference se
