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Data from: Application of a dense genetic map for assessment of genomic responses to selection and inbreeding in Heliothis virescens
负责人:
关键词:
Heliothis virescens;Colonization;ddRAD-seq;Genetic Variation;Inbreeding;linkage map
DOI:
doi:10.5061/dryad.567v8
摘要:
tory colonies have been selected for Bacillus thuringiensis (Bt) resistance. We developed 350-bp double-digest restriction-site associated DNA-sequencing (ddRAD-se
Data from: Finding the right coverage: The impact of coverage and sequence quality on SNP genotyping error rates
负责人:
关键词:
Mendelian error;Choloepus hoffmanni;genotyping error;single nucleotide polymorphism;Next Generation Sequencing;ddRAD
DOI:
doi:10.5061/dryad.8g470
摘要:
. Here, we estimated genotyping error rates in SNPs genotyped with double digest RAD sequencing from Mendelian incompatibilities in known mother-offspring
Data from: Genomic evidence for convergent evolution of a key trait underlying divergence in island birds
负责人:
关键词:
Monarcha;divergence;Monarcha castaneiventris;Speciation with gene flow;convergent evolution;RAD sequencing;Parallel speciation
DOI:
doi:10.5061/dryad.4r0t0
摘要:
d Illumina-sequenced ddRAD tags to identify genome-wide patterns of differentiation in three recently-diverged island populations of the Monarcha
Data from: Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow
负责人:
关键词:
Coalescence;Sympatry;Howea forsteriana;Howea belmoreana;ddRAD;speciation
DOI:
doi:10.5061/dryad.s3t2qn0
摘要:
d coalescence-based demographic models combined with double digest restriction-site associated DNA sequencing of multiple individuals and provide support
Data from: Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference
负责人:
关键词:
genomics;reference genome;ddRAD;bioinformatics;Galápagos sea lion (Zalophus wollebaeki)
DOI:
doi:10.5061/dryad.q14c1
摘要:
Restriction site-associated DNA sequencing (RAD-seq) provides high-resolution population genomic data at low cost, and has become an importa
Data from: Ecological speciation in sympatric palms: 3. genetic map reveals genomic islands underlying species divergence in Howea
负责人:
关键词:
Howea forsteriana;Howea belmoreana;Sympatry;ddRAD;Genome;genetic map;speciation
DOI:
doi:10.5061/dryad.rh2dq7j
摘要:
ated DNA sequencing of multiple individuals. Based upon various metrics, we detected 46 highly differentiated regions throughout the genome, some of which contained
Data from: Genetic sex assignment in wild populations using GBS data: a statistical threshold approach
负责人:
关键词:
Genotyping by-sequencing;Next-generation sequencing;Y chromosome;reduced representation sequencing;Arctocephalus forsteri;sex-specific markers
DOI:
doi:10.5061/dryad.84v2f
摘要:
reduced representation DNA sequencing (RRS) protocols (e.g., RADseq, ddRAD) have enabled the analysis of genetic data on an unprecedented scale. Her
Data from: Next generation lineage discovery: a case study of tuberous Claytonia L.
负责人:
关键词:
New species;edaphic;SVD quartets;Reticulation;Claytonia crawfordii;Elliptical Fourier Analysis;ddRAD;statistical ordination;Next Generation Sequencing;genome skimming;Montiaceae
DOI:
doi:10.5061/dryad.m99v4
摘要:
: We used modern sequencing technology to identify lineages of perennial Claytonia L., and assessed correspondence between genetic lineages and morphological
Data from: Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes
负责人:
关键词:
limnetic-benthic;QTL;sympatric speciation;ddRADseq;quantitative trait loci;Geometric morphometrics
DOI:
doi:10.5061/dryad.2h1c4
摘要:
in young crater lakes. This study identified significant QTL for body shape, using SNPs generated via ddRAD sequencing and geometric morphometric analyses of a cross bet
Data from: Genome-wide selection components analysis in a fish with male pregnancy
负责人:
关键词:
Syngnathus scovelli;FST;sexual selection;population genomics;RAD-seq;viability selection
DOI:
doi:10.5061/dryad.5c1tj
摘要:
-site associated DNA sequencing (ddRAD-seq) technique, applied to adult females, non-pregnant males, pregnant males and their offspring. An FST comparison

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