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Data from: Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
负责人:
关键词:
Orchidaceae;nrITS;matK;phylogeny;molecular systematics;ycf1;Chloroplast
DOI:
doi:10.5061/dryad.q2s7h
摘要:
of the branches). Here, we demonstrate the phylogenetic utility of a heretofore unused portion of a plastid protein-coding gene, hypothetical chloroplast
and chloroplast DNA markers
负责人:
关键词:
genetic structures;Betula platyphylla and B. ermanii;phylogeographic
DOI:
doi:10.5061/dryad.230d176
摘要:
, and results are inconsistent for species with different niches or distribution areas. We employed multiple chloroplast and nuclear markers to investigate
Data from: A long PCR based approach for DNA enrichment prior to next-generation sequencing for systematic studies
负责人:
关键词:
Lupinus leucophylla Douglas ex Lindl.;Abies fraseri (Pursh) Poir;Castilleja linariifolia Benth.;Castilleja covilleana L.F.Hend.;Castilleja elmeri Fernald;Crataegus columbiana Howell;Bartsia inaequalis Benth.;Abies amabilis Douglas ex J.Forbes;Castilleja ortegae Standl.;Abies grandis (Douglas ex D. Don) Lindley;Poa bulbosa L.;Nuphar polysepalum Engelm.;Castilleja pallescens Greenm.;Next-generation sequencing;Universal Chloroplast PCR Primers;Penstemon montanus Greene var idahoensis (Keck) Cronq.;Bromus tectorum L.;Long PCR;Castilleja applegatei Fernald;Capsella bursa-pastoris (L.) Medik.;Castilleja miniata Douglas ex Hook.;Salix scouleriana Barrat ex. Hook.;Chloroplast Enrichment;Alnus rhombifolia Nutt.;Balsamorhiza sagittata (Pursh) Nutt.;Castilleja lineariloba (Benth.) T.I.Chuang & Heckard;Plastome;Castilleja victoriae Fairbarns & J.M.Egger;Castilleja arvensis Cham. & Schltdl.;Lomatium dissectum (Nutt) Mathias & Constance;Castilleja virgata (Domb. ex Wedd.) Edwin;Balsamorhiza hookeri Nutt;Bartsia stricta (Kunth) Benth.;Polygonum douglasii Greene;Castilleja oresbia Greenm.;Angiosperms;Lamourouxia virgata Kunth;Umbellularia californica (Hook. & Arn.) Nutt.;Senecio integerrimus Nutt. var exaltatus (Nutt.) Cronq.
DOI:
doi:10.5061/dryad.kc75n
摘要:
. Our approach can be used to generate templates from any DNA source for NGS. Here we test our approach by amplifying complete chloroplast genomes and we present
Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host
负责人:
关键词:
Orchids;organelle-nucleus-coevolution;topological incongruence;Chloroplast capture;Cyrtopodiinae;Eulophiinae;cophylogenetic tool;hybridization;Satyrium;Catasetinae;Cymbidiinae
DOI:
doi:10.5061/dryad.q6s1f
摘要:
data sets often provide valuable information on evolutionary processes such as chloroplast capture following hybridization, incomplete lineage sorting
Data from: Phylogeographic patterns of the desert poplar in northwest China shaped by both geology and climatic oscillations
负责人:
关键词:
climatic oscillations;Desert poplar;Quaternary;phylogeography;Arid northwest China;Ecological Niche Modeling;Populus euphratica;Pliocene;Populus pruinosa
DOI:
doi:10.5061/dryad.v95q1
摘要:
nts in arid northwest China, we investigated the phylogeography of the Euphrates poplar (Populus euphratica) using chloroplast DNA (cpDNA) sequences
Data from: Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)
负责人:
关键词:
Environmental DNA;Pygathrix nemaeus;colobines;feces;shotgun sequencing
DOI:
doi:10.5061/dryad.99dj8
摘要:
ectively corresponded to chloroplast genomes. Sequences were matched against a database of available chloroplast ‘barcodes’ for angiosperms. The result
Data from: Cytoplasmic DNA variation and biogeography of Larix Mill. in Northeast Asia
负责人:
关键词:
Northeast Asia;glacial refugia;mtDNA;Biogeography;cpDNA;Larix;Larix olgensis;Larix kaempferi;Larix kamtschatica;Larix gmelinii;Larix cajanderi;Holocene;Pleistocene
DOI:
doi:10.5061/dryad.1191
摘要:
ondrial PCR-RFLP and five chloroplast SSR markers. Eleven mitotypes and 115 chlorotypes were detected. The highest diversity was observed in the southern
Data from: Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure
负责人:
关键词:
replication;chloroplast genome inverted repeats plastome ptDNA RDR recombination replication unit-genome;RDR;ptDNA;recombination;Chloroplast;Plastome;inverted repeats;Monsonia;unit-genome
DOI:
doi:10.5061/dryad.p34h3
摘要:
of plastid genomes (plastomes). The common phenomenon of small and large single copy inversion, hypothesized to occur through intramolecular recombination bet
Data from: Testing for phylogenetic conflict among molecular data sets in the Tribe Triticeae (Gramineae)
负责人:
关键词:
Gramineae;Triticeae;Wilcoxon signed ranks test;permutation test;Poaceae;T-PTP test;phylogenetic congruence
DOI:
doi:10.5061/dryad.743
摘要:
cement of a single taxon. The chloroplast DNA restriction site data, however, support a significantly different tree, and the differences probably reflect a separate

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