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Data from: Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation
负责人:
关键词:
phylogenetic resolution;hypothesis testing;Saxifragales;ribosomal DNA;data partition congruence;rapid radiation;chloroplast genes;maximum likelihood estimation
DOI:
doi:10.5061/dryad.684
摘要:
is not due to violations of assumptions or the combination of data partitions with conflicting histories or processes. We show that estimated branch lengths duri
Data from: The impact of reconstruction methods, phylogenetic uncertainty and branch lengths on inference of chromosome number evolution in American
负责人:
关键词:
Model Uncertainty;Dysploidy;Model averaging;ancestral state reconstruction;Asteraceae;Melampodium
DOI:
doi:10.5061/dryad.6r12h
摘要:
of reconstruction method (maximum parsimony, maximum likelihood, Bayesian methods), branch length model (phylograms versus chronograms) and phylogenetic unc
Data from: Inflation of molecular clock rates and dates: molecular phylogenetics, biogeography, and diversification of a global cicada radiation from
负责人:
关键词:
relaxed clock calibration maximum-likelihood branch lengths gamma distribution aridification climate change
DOI:
doi:10.5061/dryad.5590q
摘要:
rates and maximum-likelihood branch lengths become inflated relative to EF-1α intron and exon rates and branch lengths as clade age increases. We present
Data from: Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees
负责人:
关键词:
Brownian motion;comparative method;pure-birth process;Yule process;trait disparity;phylogenetic diversity;Markov reward process;quantitative trait evolution
DOI:
doi:10.5061/dryad.2cb46
摘要:
a closed-form expression for the distribution of phylogenetic diversity, which is the sum of branch lengths connecting a set of taxa. We then present a genera
Data from: Links between parental life histories of wild salmon and the telomere lengths of their offspring
负责人:
关键词:
Salmo salar;Telomere;Life history;egg size;Salmo;parental effects
DOI:
doi:10.5061/dryad.5b6f7
摘要:
ed by both genes and environment; and this may have important consequences for offspring. Recent research has linked telomere dynamics (i.e. telomere length
Data from: Strength of selection on Trpc2 gene predicts accessory olfactory bulb form in bat vomeronasal evolution
负责人:
关键词:
bats;vomeronasal system;Trpc2;vestigial structure;Phyllostomidae;chemosensation;Gene tree;Macroevolution;phylogenetic logistic regression;Chiroptera
DOI:
doi:10.5061/dryad.n8h25
摘要:
chemical cues. By applying a phylogenetic logistic regression, we found a strong negative relationship between the branch lengths representing rates of codon ch
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Rhyssoplax olivaceus;Lineus lacteus;Novocrania anomala;Boccardia proboscidea;Clymenella torquata;Glottidia pyramidata;Phascolosoma agassizii;saturation;Patella vulgata;Adineta vaga;Leptochiton asellus;Megadasys sp.;Spathoderma clenchi;Schistosoma mansoni;Platyzoa;Brachionus plicatilis;Loxosoma pectinaricola;Paranemertes peregrina;Phenacolepas pulchella;Taenia pisiformis;Ruditapes philippinarum;Sepioteuthis lessoniana;Macellomenia schanderi;Capitella teleta;Phoronis vancouverensis;Pomatoceros lamarckii;Alexandromenia crassa;Prochaetoderma californicum;Entalina tetragona;Symbion americanus;Spiralia;Neomenia carinata;Dosidicus gigas;Alitta virens;Tubulanus polymorphus-Halanych;Nemertea;Cephalothrix linearis;Mollusca;drosophila melanogaster;Laqueus californicus;Crassostrea gigas;Laevipilina hyalina;Macrodasys sp.;Phoronida;Aplysia californica;Mytilus edulis;Hemithiris psittacea;Bryozoa;Pectinaria gouldii;Octopus vulgaris;Brachiopoda;Compositional heterogeneity;Lineus longissimus;Gnathostomula paradoxa;Leptochiton rugatus;Graptacme eborea;Cephalothrix hongkongensis;Lottia gigantea;Nuculana pernula;Helobdella robusta;Priapulus caudatus;Daphnia pulex;Barentsia gracilis;Trochozoa;Malacobdella grossa;Enucula tenuis;Loxosomella cf. vivipara;Crepidula fornicata;Haliotis rufescens;Polyzoa;Nucella lapillus;Pedicellina cernua;Sagitta sp.;Tubulanus polymorphus-Struck;Annelida;Gadila tolmiei;Cerebratulus marginatus;Entoprocta;Villosa lienosa;Bugula neritina;Glycera dibranchiata;Lineus ruber;Sepia esculenta;Solemya velum;Long branch attraction;Schmidtea mediterranea;Pinctada fucata;Phoronis psammophila
DOI:
doi:10.5061/dryad.30k4v
摘要:
t compositional heterogeneity and average patristic distance contributed most to the variance observed along the first principal component while branch-length heterogeneity
Data from: Reconstructing the evolution of giant extinct kangaroos: comparing the utility of DNA, morphology, and total evidence
负责人:
关键词:
Total Evidence;phylogenetic inference;morphology;Macropodidae;ancient DNA;ancestral state reconstruction
DOI:
doi:10.5061/dryad.7809km8
摘要:
by tracing body mass on morphological branch lengths. This is likely due to positive allometric correlation between morphological and body size
Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host
负责人:
关键词:
Orchids;organelle-nucleus-coevolution;topological incongruence;Chloroplast capture;Cyrtopodiinae;Eulophiinae;cophylogenetic tool;hybridization;Satyrium;Catasetinae;Cymbidiinae
DOI:
doi:10.5061/dryad.q6s1f
摘要:
. The performance of ParaFit was overall inferior compared to PACo, using either phylograms or unit branch lengths as input data. Because workflows for applying
Data from: Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
负责人:
关键词:
maximum likelihood;reconstituted DNA;Phrynosomatidae;ddRADseq;conditional likelihood;Phrynosoma
DOI:
doi:10.5061/dryad.t9r3g
摘要:
. Phylogenetic analysis of RAD loci requires careful attention to model assumptions, especially if downstream analyses depend on branch lengths.

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