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Data from: The persistence of multiple strains of avian influenza in live bird markets
负责人:
关键词:
Avian Influenza;stochastic model;Co-infection;Critical community size;R0
DOI:
doi:10.5061/dryad.np4pm
摘要:
of co-infections is more likely to be owing to sequential infection of single strains rather than ongoing transmission of both strains concurrently. In any give
Data from: Infectious disease dynamics inferred from genetic data via sequential Monte Carlo
负责人:
关键词:
sequential Monte Carlo;HIV;maximum likelihood;Virus evolution;Phylodynamics;iterated filtering
DOI:
doi:10.5061/dryad.3634m
摘要:
Genetic sequences from pathogens can provide information about infectious disease dynamics that may supplement or replace information from other
Data from: Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation
负责人:
关键词:
DOI:
doi:10.5061/dryad.vf33q
摘要:
ecotype level. Moreover, sequence analysis of two pathogen infectivity loci revealed strong genetic differentiation by host ecotype but not by distance
Data from: Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
负责人:
关键词:
phylogenetics;sequential Monte Carlo;Online Inference;Bayesian inference
DOI:
doi:10.5061/dryad.n7n85
摘要:
Modern infectious disease outbreak surveillance produces continuous streams of sequence data which require phylogenetic analysis as data arrives
Data from: Metatranscriptomics yields new genomic resources and sensitive detection of infections for diverse blood parasites
负责人:
关键词:
Plasmodium;malaria parasite;Co-infection;RNA-seq;Parahaemoproteus;Holocene;Leucocytozoon
DOI:
doi:10.5061/dryad.2646vp0
摘要:
intensities and exist as multi-species infections, rendering the isolation of genomic sequence data challenging. Here, we use birds and their diverse
Data from: Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
负责人:
关键词:
Transmission networks;HIV;Infectious disease epidemiology;2011-2015;phylogenetics;Deep-sequence phylogenetics;HIV prevention;Phylodynamics
DOI:
doi:10.5061/dryad.7h46hg2
摘要:
e able to deep-sequence virus from a large population-based sample of infected individuals in Rakai District, Uganda, reconstruct partial transmission network
Data from: 28 year temporal sequence of epidemic dynamics in a natural rust – host plant metapopulation
负责人:
关键词:
Epidemiology;rust;host-pathogen interactions;fungal pathogen;asynchrony;metapopulation;time series
DOI:
doi:10.5061/dryad.s5700
摘要:
ly more seeds than those growing in high disease sites. Significant variation in reaction to infection by U. valerianae was detected among plant
Data from: Incomplete host immunity favors the evolution of virulence in an emergent pathogen
负责人:
关键词:
Evolution of virulence;Incomplete immunity;Avian disease;host-pathogen interactions;Mycoplasma gallisepticum;Haemorhous mexicanus
DOI:
doi:10.5061/dryad.435h5
摘要:
-pathogen system. We performed sequential infections of house finches with Mycoplasma gallisepticum strains of varying virulence. Virulent bacterial
Data from: Natural selection in the water: freshwater invasion and adaptation by water color in the Amazonian pufferfish
负责人:
关键词:
Colomesus asellus;adaptive divergence;phylogeography;population genomics;Amazonia;genome scan
DOI:
doi:10.5061/dryad.m6k89833
摘要:
on of divergent natural selection has been hindered by the spatial complexity of natural systems, the difficulty in identifying genes under selection and their relati
Data from: Mosquitoes host communities of bacteria that are essential for development but vary greatly between local habitats
负责人:
关键词:
Genomics\/Proteomics;insects;Microbial Biology;bacteria;Comparative Biology
DOI:
doi:10.5061/dryad.qs43p
摘要:
. Sequence analysis of bacterial 16S rRNA gene amplicons showed that bacterial community composition differed substantially in larvae from different collection sites

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