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Data from: Modelling dynamics in protein crystal structures by ensemble refinement
负责人:
关键词:
DOI:
doi:10.5061/dryad.5n01h
摘要:
Single-structure models derived from X-ray data do not adequately account for the inherent, functionally important dynamics of protein
Data from: Functional advantages of conserved intrinsic disorder in RNA-binding proteins
负责人:
关键词:
bioinformatics;intrinsically disordered proteins;RNA-binding
DOI:
doi:10.5061/dryad.33vn1
摘要:
h large-scale analysis of comprehensive protein sequence and structure datasets we demonstrate the prevalence of intrinsic structural disorder in RNA-binding proteins
Data from: Ensembler: enabling high-throughput molecular simulations at the superfamily scale
负责人:
关键词:
comparative modeling;molecular dynamics simulation;distributed simulation
DOI:
doi:10.5061/dryad.7fg32
摘要:
The rapidly expanding body of available genomic and protein structural data provides a rich resource for understanding protein
Data from: Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information
负责人:
关键词:
T. thermophilus;protein coevolution;protein complexes;pseudo-likelihood;E. coli
DOI:
doi:10.5061/dryad.s00vr
摘要:
based method to covary across protein-protein interfaces in the 50S ribosomal unit and 28 additional bacterial protein complexes with known structure ar
Data from: Accurate geometries for “mountain pass” regions of the Ramachandran plot using quantum chemical calculations
负责人:
关键词:
DFT;local structure;protein;B3LYP;backbone;poly-peptides;unusual arrangements
DOI:
doi:10.5061/dryad.f47h1
摘要:
Unusual local arrangements of protein in Ramachandran space is not well represented by standard geometry tools used in either protein structure
Data from: Charting the NF-?B pathway interactome map
负责人:
关键词:
DOI:
doi:10.5061/dryad.ng730
摘要:
to reconstruct a single, comprehensive picture of the proteins that interact with, and participate to the NF-?B activation system. Such a reconstruction shows tha
Data from: Metaproteomics reveals metabolic transitions between healthy and diseased stony coral Mussismilia braziliensis
负责人:
关键词:
White-Plague Syndrome;metaproteome;Black Band Disease;2012;bacteria;Mussismilia braziliensis;Symbiodinium
DOI:
doi:10.5061/dryad.pc303
摘要:
and included chaperones (hsp70, hsp90 and calreticulin), structural and membrane modelling proteins (actin) and proteins with functions related to intracellular
Data from: Describing complex structure-function relationships in biomolecules at equilibrium
负责人:
关键词:
statistical thermodynamics;fluorescence landscapes;Periplasmic binding proteins;Glucose biosensor;Nested equilibrated states trees;nest;Protein structure-function relationships
DOI:
doi:10.5061/dryad.rr4xgxd5b
摘要:
ions. ?This protein represents a minimalist model of sufficient complexity to encompass fundamental biomolecular structure-function relationships: two- and multi-state
Data from: Phenotypic integration in an extended phenotype: among‐individual variation in nest‐building traits of the alfalfa leafcutting bee
负责人:
Royauté, Rapha?l
关键词:
Animal personality behavioral syndromes extended phenotype nesting behavior leafcutting bee phenotypic integration
DOI:
doi:10.5061/dryad.n925d21
摘要:
in the following nest construction traits: reproduction (number of cells per nest and nest length), nest protection (cap length and number of leaves per cap), cell construction
Data from: Residue proximity information and protein model discrimination using saturation-suppressor mutagenesis
负责人:
关键词:
Pairwise contacts;Structure prediction;Protein stability;Model discrimination
DOI:
doi:10.5061/dryad.3g092
摘要:
Identification of residue-residue contacts from primary sequence can be used to guide protein structure prediction. Using Escherichia coli CcdB

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