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Data from: Exploring evolution and diversity of Chinese Dipterocarpaceae using next-generation sequencing
负责人:
关键词:
Dipterocarpaceae
DOI:
doi:10.5061/dryad.1512pn3
摘要:
h biodiversity and evolutionary relationships through space and time using plastome, nuclear and mitochondrial genome. We generated full plastome and Nuclear
Data from: Utilizing next-generation sequencing to resolve the backbone of the Core Goodeniaceae and inform future taxonomic and floral form studies
负责人:
关键词:
Plastome;Scaevola;Backbone topology;Selliera;Verreauxia;nuclear ribosomal repeat;Velleia;Cenozoic;Goodeniaceae;Coopernookia;Goodenia;Diaspasis
DOI:
doi:10.5061/dryad.4mp00
摘要:
of the phylogeny. We performed genome skimming for 24 taxa representing major clades within Core Goodeniaceae. The plastome coding regions (CDS) and nuclear
Data from: Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?
负责人:
关键词:
GATK;SNP;NGS;heterozygote;Chloroplast;SAMtools
DOI:
doi:10.5061/dryad.31733
摘要:
genome sequences for inferring phylogeography or phylogeny. Even though the chloroplast is a haploid organelle, NGS plastome data identified a non negligible number of intra
Data from: A long PCR based approach for DNA enrichment prior to next-generation sequencing for systematic studies
负责人:
关键词:
Lupinus leucophylla Douglas ex Lindl.;Abies fraseri (Pursh) Poir;Castilleja linariifolia Benth.;Castilleja covilleana L.F.Hend.;Castilleja elmeri Fernald;Crataegus columbiana Howell;Bartsia inaequalis Benth.;Abies amabilis Douglas ex J.Forbes;Castilleja ortegae Standl.;Abies grandis (Douglas ex D. Don) Lindley;Poa bulbosa L.;Nuphar polysepalum Engelm.;Castilleja pallescens Greenm.;Next-generation sequencing;Universal Chloroplast PCR Primers;Penstemon montanus Greene var idahoensis (Keck) Cronq.;Bromus tectorum L.;Long PCR;Castilleja applegatei Fernald;Capsella bursa-pastoris (L.) Medik.;Castilleja miniata Douglas ex Hook.;Salix scouleriana Barrat ex. Hook.;Chloroplast Enrichment;Alnus rhombifolia Nutt.;Balsamorhiza sagittata (Pursh) Nutt.;Castilleja lineariloba (Benth.) T.I.Chuang & Heckard;Plastome;Castilleja victoriae Fairbarns & J.M.Egger;Castilleja arvensis Cham. & Schltdl.;Lomatium dissectum (Nutt) Mathias & Constance;Castilleja virgata (Domb. ex Wedd.) Edwin;Balsamorhiza hookeri Nutt;Bartsia stricta (Kunth) Benth.;Polygonum douglasii Greene;Castilleja oresbia Greenm.;Angiosperms;Lamourouxia virgata Kunth;Umbellularia californica (Hook. & Arn.) Nutt.;Senecio integerrimus Nutt. var exaltatus (Nutt.) Cronq.
DOI:
doi:10.5061/dryad.kc75n
摘要:
. Conclusions: Although here we tested this approach by sequencing plastomes, long PCR amplicons could be generated using DNA from any genome, expanding
Data from: Complete plastome sequence of Thalictrum coreanum (Ranunculaceae) and transfer of the rpl32 gene to the nucleus in the ancestor
负责人:
关键词:
plastid genome;infA;gene loss;Thalictrum coreanum;rpl32;intracellular gene transfer;meadow-rue
DOI:
doi:10.5061/dryad.g84g5
摘要:
Background: Plastids originated from cyanobacteria and the majority of the ancestral genes were lost or functionally transferred to the nucleus aft
Data from: Plastome phylogenetics of tribe Eriachneae and evolution of C? photosynthesis in subfamily Micrairoideae (Poaceae)
负责人:
关键词:
grasses;Micrairoideae;Eriachne;Poaceae;Eriachneae;plastome phylogenomics
DOI:
doi:10.5061/dryad.vp2614j
摘要:
st well-resolved phylogeny of Eriachneae based on full plastome sequences from almost half of the species in the tribe. Photosynthetic pathway is tested for 47
Data from: Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn
负责人:
关键词:
Phragmites australis;grass;Arundinoideae;awn;Poaceae;Arundo donax;phylogenomics
DOI:
doi:10.5061/dryad.v7m05
摘要:
: A phylogenetic analysis was conducted on a matrix of full-plastome sequences from 123 species in 107 genera representing all grass subfamilies, with 15 of the 19 genera
Data from: Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium
负责人:
关键词:
grassland dominants;herbarium;Andropogon;Hyparrhenia;Elymandra;plastome phylogeny;Andropogoneae;image analysis;Monocymbium;Schizachyrium
DOI:
doi:10.5061/dryad.70f538g
摘要:
with environmental variables. We are currently generating chloroplast genome sequences to correct for phylogenetic covariance and here present an analysis of a subset of 81

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