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Data from: High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
负责人:
Malausa, Thibaut
关键词:
Population Genetics - Empirical Genomics/Proteomics Bioinfomatics/Phyloinfomatics Fungi Insects genetic markers
DOI:
doi:10.5061/dryad.8297
摘要:
Microsatellites (or SSR: simple sequence repeat) are among the most frequently used DNA markers in many areas of research. The use
Data from: Microsatellite markers from the Ion Torrent: a multi-species contrast to 454 shotgun sequencing
负责人:
关键词:
Macrozamia riedlei;Podocarpus drouynianus;Plant Mating Systems;Landscape Genetics;Ricinocarpos brevis;Angiosperms;Ecological Genetics;Gymnosperms;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.vv82q
摘要:
The development and screening of microsatellite markers have been accelerated by next-generation sequencing (NGS) technology and in particular GS-FLX
Data from: Ultraconserved elements sequencing as a low-cost source of complete mitochondrial genomes and microsatellite markers in non-model amniotes
负责人:
关键词:
microsatellites Mitogenomes Ultraconserved elements
DOI:
doi:10.5061/dryad.33656
摘要:
is an excellent source of both sequences for microsatellite loci design and complete mitochondrial genomes with high sequencing depth. Identification of dozens
Data from: High-throughput microsatellite marker development in two sparid species and verification of their transferability in the family Sparidae
负责人:
关键词:
454 sequencing;Lithognathus lithognathus;Sparidae;cross-species amplification;FIASCO microsatellite enrichment;Pachymetopon blochii
DOI:
doi:10.5061/dryad.320kb06t
摘要:
Recently, 454 sequencing has emerged as a popular method for isolating microsatellites owing to cost-effectiveness and time saving. In this study
Data from: Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys
负责人:
关键词:
Acipenser fulvescens;repeat motif;Dipodomys spectabilis;454 pyrosequencing;genomics;Ambystoma tigrinum;coding region
DOI:
doi:10.5061/dryad.49s43
摘要:
d regions or coding sequences of genes; and (iv) in silico polymorphism. Microsatellites were less common in tiger salamanders than in either lake sturgeon or kangaroo rats. Acros
Data from: Microsatellites for the marsh Fritillary butterfly: de novo transcriptome sequencing, and a comparison
负责人:
关键词:
microsatellites;Next-generation sequencing;454;Euphydryas aurinia;EST;Lepidoptera;AFLP;amplified fragment length polymorphisms
DOI:
doi:10.5061/dryad.309t3
摘要:
amplified fragment length polymorphism (AFLP) markers (r = 0.68, p<0.001). SIGNIFICANCE: Rapid development of microsatellite markers for difficult taxa such as Lepidoptera, and concordant result
Data from: Analysis of microsatellite loci in tree of heaven (Ailanthus altissima (Mill.) Swingle) using SSR-GBS
负责人:
关键词:
genotyping by sequencing;SNP;microsatellite;Amplicon Sequencing;Ailanthus altissima;Tree of heaven
DOI:
doi:10.5061/dryad.873b2j2
摘要:
, next generation sequencing (NGS) has offered advanced techniques for efficiently identifying microsatellite markers and accurately genotyping samples. Here, we identify ne
Data from: Exploitation of a turbot (Scophthalmus maximus L.) immune-related expressed sequence tag (EST) database for microsatellite scr
负责人:
关键词:
Captive Populations;Scophthalmus maximus;Fisheries Management;Aquaculture;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.q2c86hb2
摘要:
In this study, we identified and characterized 160 microsatellite loci from an expressed sequence tag (EST) database generated from immune-relate
Data from: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation
负责人:
关键词:
microsatellites;genetic diversity;SSR;conservation units;SNPs;population genomics;Expected heterozygosity;Arabidopsis halleri;Pool-Seq;whole-genome re-sequencing
DOI:
doi:10.5061/dryad.11jp5
摘要:
d, but microsatellite-based estimates were significantly larger than those from SNPs. Possible causes include the limited number of microsatellite markers used, marker
Data from: Development of conserved microsatellite markers of high cross-species utility in bat species (Vespertilionidae, Chiroptera, Mammalia)
负责人:
关键词:
microsatellite;Myotis;cross-species utility;Vespertilionidae;Conservation Biology;Chiroptera
DOI:
doi:10.5061/dryad.62cr1q22
摘要:
for vespertilionid bats, in particular for the genus Myotis (103 species). We compared published bat microsatellites with their homologs in the genome sequence of the littl

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