Data from: Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae)

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关键词：

section Cryptoneurae;Bayes factors;Silene;species delimitation;Multispecies coalescent;Caryophyllaceae;Silene ertekinii sp. nov.

DOI：

doi:10.5061/dryad.nj984

摘要：

implemented in BEAST. To select among alternative species classification models a posterior simulation-based analog of the AIC through Markov chain Monte Car

Data from: Understanding past population dynamics: Bayesian coalescent-based modeling with covariates

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关键词：

population genetics;Gaussian Markov Random Fields;phylogenetics;coalescent;Bayesian inference;Phylodynamics;Evolutionary Biology;effective population size

DOI：

doi:10.5061/dryad.mj0hn

摘要：

te the posterior distribution, we adapt efficient Markov chain Monte Carlo algorithms designed for highly structured Gaussian models. Incorporating covariates int

Data from: Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses

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关键词：

information content;Bayes factors;Bias;turtles;ultraconserved elements;amniotes;posterior probability;phylogenomics;Expressed Sequence Tags;Negative Constraints;ortholog

DOI：

doi:10.5061/dryad.8gm85

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h as Markov chain Monte Carlo estimates of posterior probabilities). Bayes factors reveal important, previously hidden, differences across six “phylogenomic” data sets collected

Data from: Detecting epistasis from an ensemble of adapting populations

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关键词：

Fitness Trajectory;molecular clock;Reversible Markov Chains;Weak Mutation;Adaptation

DOI：

doi:10.5061/dryad.0hm4r

摘要：

The role that epistasis plays during adaptation remains an outstanding problem, which has received considerable attention in recent years. Mos

Data from: Genomic analysis of demographic history and ecological niche modeling in the endangered Sumatran Rhinoceros Dicerorhinus sumatrensis

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关键词：

Demography;Pairwise sequentially Markovian coalescent;whole genome sequencing;Rhinoceros;Evolution;Dicerorhinus sumatrensis;Holocene;Pliocene;Ecological Niche Modeling;Pleistocene

DOI：

doi:10.5061/dryad.2jp32

摘要：

to eliminate this group entirely. The Sumatran rhinoceros (Dicerorhinus sumatrensis) is among the most imperiled mammals on earth. The 2011 populati

Data from: Cladogenetic and anagenetic models of chromosome number evolution: a Bayesian model averaging approach

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关键词：

anagenetic;Dysploidy;polyploidy;Bayes factors;ChromoSSE;phylogenetic models;whole genome duplication;chromosome evolution;reversible-jump Markov chain Monte Carlo;chromosome speciation;cladogenetic

DOI：

doi:10.5061/dryad.46m4b

摘要：

in evolution. Dysploid gains and losses in chromosome number, as well as polyploidization events, may drive reproductive isolation and lineage diversificati

Data from: Tree phenology responses to winter chilling, spring warming, at north and south range limits

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关键词：

degree-day models;hidden Markov model;phenology;chilling requirement;warming;Forests

DOI：

doi:10.5061/dryad.38r08

摘要：

in the eastern deciduous forest of the US, in North Carolina and Massachusetts. Results provide a detailed time course of phenological development, including vernalization duri