Data from: The effects of model choice and mitigating bias on the ribosomal tree of life

负责人：

关键词：

Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp

DOI：

doi:10.5061/dryad.7785h

摘要：

conflicting phylogenetic signals from HGT and/or paralogy. Thus, we tested several models of varying sophistication on three different datasets, performed