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Data from: Non-specific amplification compromises environmental DNA metabarcoding with COI
负责人:
关键词:
Environmental DNA;12S;Metabarcoding;Actinopterygii;COI;eDNA;primer design
DOI:
doi:10.5061/dryad.b8f6s44
摘要:
ds and legislative frameworks. Mitochondrial cytochrome c oxidase subunit I (COI), the standard DNA barcode marker for animals, with its extensive reference library
Data from: Anacapa Toolkit: an environmental DNA toolkit for processing multilocus metabarcode datasets
负责人:
关键词:
Environmental DNA
DOI:
doi:10.5061/dryad.mf0126f
摘要:
w multilocus metabarcode sequence data to accurately characterize communities. A novel aspect of Anacapa is our database builder, Creating Reference libraries
Data from: Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity
负责人:
关键词:
DNA Barcoding Fish Fisheries Management Habitat Degradation Wildlife Management
DOI:
doi:10.5061/dryad.tk5rj
摘要:
provides a DNA barcode reference library for the inland fishes of Java and Bali with the aim to streamline the inventory of fishes in this par
Data from: Metabarcoding reveals diet diversity in an ungulate community in Thailand
负责人:
关键词:
Western Forest Complex;niche breadth;Metabarcoding;DNA Barcode;ForestGEO;Bovid;deer
DOI:
doi:10.5061/dryad.0cfxpnvx6
摘要:
e codified within a genetic barcode library and used in this study. This DNA library was supplemented with samples from forb and gra
Data from: A reliable DNA barcode reference library for the identification of the European shelf fish fauna
负责人:
关键词:
DOI:
doi:10.5061/dryad.rn636
摘要:
dation of the sequence library by applying BOLDs barcode index number (BIN) analysis tool and a ranking system demonstrated high taxonomic reliability of the DNA barcode
Data from: Testing the potential of DNA barcoding in vertebrate radiations: the case of the littoral cichlids (Pisces, Perciformes, Cichlidae) from
负责人:
关键词:
DNA Barcoding;adaptive radiation;species discovery;Cichlidae;Fish;identification;COI
DOI:
doi:10.5061/dryad.787d9
摘要:
We obtained 398 cytochrome c oxidase subunit I barcodes of 96 morphospecies of Lake Tanganyika (LT) cichlids from the littoral zone. The potential
Data from: A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: appli
负责人:
关键词:
second generation sequencing DNA barcoding mini-barcode mitochondrial marker trophic interactions food web
DOI:
doi:10.5061/dryad.6gd51
摘要:
nge of environmental samples. Identifying species from these samples relies on the ability to match sequences with reference barcodes for taxonomic identification. Unfortunat
Data from: DNA barcoding of invasive plants in China: a resource for identifying invasive plants
负责人:
关键词:
ecosystem services;DNA Barcoding;molecular evolution;invasive species;Conservation Biology
DOI:
doi:10.5061/dryad.4t13k
摘要:
%). Thus, we propose ITS/ITS2+matK as the most suitable barcode for invasive plants in China. This study also demonstrated that DNA barcoding is an efficient tool
Data from: Starting a DNA barcode reference library for shallow water polychaetes from the southern European Atlantic coast
负责人:
关键词:
Capitellidae;Cirriformia tentaculata;Glycera alba;Leiochone leiopygos;Platynereis bicanaliculata;Leitoscoloplos pugettensis;Estuaries;Marphysa disjuncta;Trypanosyllis coeliaca;Lepidonotus squamatus;Nereis zonata;Platynereis dumerilii;Pista flexuosa;Trichobranchidae;Spionidae;Cirratulus spectabilis;Nicolea zostericola;Axiothella constricta;Pista cristata;Euclymene;Perinereis cultrifera;Hediste diversicolor;Cirratulidae;Notomastus profondus;Eulalia viridis;Euclymene santandarensis;Diopatra marocensis;Perinereis vallata;Scoloplos acutus;Capitella capitata;Lumbrineris latreilli;Owenia fusiformis;Trichobranchus glacialis;Euclymene robusta;Praxillella affinis pacifica;Orbiniidae;Terebellidae;Phyllodocidae;Benthos;Glycera southeastatlantica;Heteromastus filiformis;Marphysa sanguinea;Neanthes japonica;Nephtys hombergii;Trypanosyllis zebra;Lysidice ninetta;Perinereis;Lysidice collaris;taxonomy;Nephtys;Harmothoe impar;Hoplochaetella stuarti;Pista estevanica;Marphysa;Lepidonotus clava;Scolelepis;Lumbrineris;Nereis falsa;Syllis;Harmothoe imbricata;Scolelepis squamata;Syllis elongata;Glycera;Nereis pelagica;Sabellaria alveolata;Nephtys caeca;Axiothella rubrocincta;Praxillella praetermissa;Polynoidae;Maldanidae;Sthenelais boa;Nepthyidae;Diopatra neapolitana;Scolelepis foliosa;Streblospio shrubsolii;Sabella pavonina;Annelida;Ninoe nigripes;Cirriformia;Cytochrome c oxidase subunit I (COI-5P);Lumbrineris tetraura;Neanthes fucata;Eteone flava
DOI:
doi:10.5061/dryad.6h88s
摘要:
. The final data set comprised 290 specimens and 79 morphospecies, which generated 99 Barcode Index Numbers (BINs) within Barcode of Life Data Systems (BOLD
Data from: Taxonomic challenges in freshwater fishes: a mismatch between morphology and DNA barcoding in fish of the north-eastern part of the Congo basin
负责人:
关键词:
Enteromius cf. atromaculatus;\Ctenopoma\ ocellatum;Marcusenius angolensis;Labeobarbus hybrid mawambiensis x longidorsalis;Paramormyrops kingsleyae;Chrysichthys habereri;Tylochromis lateralis;Gnathonemus petersii;Parauchenoglanis balayi;Garra dembeensis;Schilbe grenfelli;Microthrissa royauxi;Synodontis schoutedeni;Brachypetersius altus;Leptocypris lujae;Acanthocleithron chapini;Labeo chariensis;Kribia nana;Labeo parvus;Chrysichthys cranchii;Oxymormyrus boulengeri;Distichodus sp.;Synodontis alberti;Gnathonemus echidnorhynchus;Synodontis smiti;Xenocharax spilurus;Labeo cyclopinnis;Congopanchax myersi;Parachanna obscura;Synodontis acanthomias;Synodontis nigriventris;Micralestes acutidens;Enteromius jae;Parauchenoglanis sp.;Petrocephalus schoutedeni;Pelmatochromis nigrofasciatus;Campylomormyrus tamandua;Synodontis decorus;Synodontis dorsomaculatus;Rhabdalestes yokai;Distichodus noboli;Labeobarbus longidorsalis;Enteromius atromaculatus;Parakneria camerunensis;Alestes liebrechtsii;Orthochromis stormsi;Genyomyrus donnyi;Brycinus sp. \Epulu\;Chromidotilapia schoutedeni;Stomatorhinus cf. fuliginosus;Stomatorhinus cf. kununguensis;Brycinus imberi;Schilbe intermedius;Clarias sp. \angolensis sole-shaped\;Bathyaethiops caudomaculatus;Bryconaethiops microstoma;Brycinus grandisquamis;Hemichromis lifalili;Synodontis nummifer;Petrocephalus christyi;Brycinus bimaculatus;Clarias sp. \pachynema long barbels\;Campylomormyrus alces;Chrysichthys punctatus;Micralestes stormsi;Enteromius sp. \Congo\;Brycinus sp. \Congo\;Enteromius sp. \10 cps\;Nannocharax schoutedeni;Ichthyborus ornatus;Marcusenius cf. stanleyanus;Synodontis angelicus;Hippopotamyrus weeksii;Mormyrops anguilloides;Clarias liocephalus;Clarias buthupogon;Haplochromis sp. \Yaekama\;Pollimyrus cf. nigripinnis;Mormyrus caballus bumbanus;Phenacogrammus interruptus;Pollimyrus nigripinnis;Petrocephalus grandoculis;Schilbe marmoratus;Enteromius sp. \Loboya\;Marcusenius stanleyanus;DNA Barcoding;Alestopetersius compressus;Synodontis congicus;Marcusenius sp. \flat head\;Synodontis greshoffi;Marcusenius leopoldianus;Clarias gabonensis;Polypterus delhezi;Bryconaethiops boulengeri;Channallabes apus;Enteromius brazzai;Clarias gariepinus;Hemichromis elongatus;Mormyrops nigricans;Chrysichthys longibarbis;Malapterurus microstoma;Potamothrissa acutirostris;Distichodus lusosso;Synodontis notatus;Marcusenius monteiri;Auchenoglanis occidentalis;Fenerbahce cf. devosi;Distichodus maculatus;Coptodon rendalli;Eugnathichthys macroterolepis;Petrocephalus sp. \simus Congo\;Distichodus teugelsi;Marcusenius greshoffi;Mesoborus crocodilus;biodiversity;Distichodus cf. teugelsi;Clarias dumerilli;Clarias sp.;Alestes macrophthalmus;Distichodus antonii;Petrocephalus sauvagii;Synodontis pleurops;Ctenopoma ocellatum;Chrysichthys longipinnis;Pelmatochromis ocellifer;Raiamas cf. christyi;Mormyrops attenuatus;Hypsopanchax platysternus;Papyrocranus congoensis;Clariallabes variabilis;Clariallabes melas;Pollimyrus adspersus;Oreochromis leucostictus;Labeo altivelis;Marcusenius schilthuisiae;Pareutropius debauwi;Clarias platycephalus;Coptodon zillii;Aphyosemion sp. nov.;Enteromius miolepis;Enteromius cf. trinotatus;Undetected taxonomic diversity;Labeo longipinnis;Citharinus gibbosus;Labeo nasus;Eugnathichthys eetveldii;Distichodus sexfasciatus;Clarias dumerillii;Parauchenoglanis punctatus;Distichodus atroventralis;Neolebias trilineata;Labeobarbus hybrid macroceps x mawambiensis;Malapterurus melanochir;Microctenopoma uelense;Labeo greenii;Bagrus ubangiensis;Phago boulengeri;Hydrocynus vittatus;Petrocephalus binotatus;Chanallabes apus;Lamprologus mocquardi;Distichodus fasciolatus;Micralestes humilis;Micralestes lualabae;Pantodon buchholzi;Mastacembelus congicus;Ctenopoma nigropannosum;Chrysichthys congicus;Polypterus congicus;Clarias sp. \pachynema long barbels\/pectorals\;Hepsetus sp. \Congo\;Lates niloticus;Haplochromis sp. \yellow\;Heterobranchus sp.;Raiamas salmolucius;Phago intermedius;Enteromius stanleyi;Congochromis dimidiatus;Opsaridium ubangiense;Brycinus kingsleyae;Enteromius cf. urostigma;Labeobarbus caudovittatus;Oxymormyrus zanclirostris;Euchilichthys royauxi;Enteromoius cf. urostigma;Tetraodon miurus;Hemigrammocharax uniocellatus;Cyphomyrus psittacus;Bryconaethiops macrops;Labeo lukulae;Parachanna insignis;Labeo lineatus;Myomyrus macrops;Synodontis flavitaeniatus;Epiplatys cf. multifasciatus;Campylomormyrus numenius;Enteromius lukusiensis;Oreochromis niloticus niloticus;Aphyosemion cf. musafirii;Brycinus poptae;Congoglanis alula;Petrocephalus microphthalmus;Pollimyrus plagiostoma;Distichodus affinis;Mormyrops furcidens;Pollimyrus osborni;Clypeobarbus pleuropholis;Eugnathichthys virgatus;Synodontis iturii;Labeo cyclorhynchus;Marcusenius kutuensis;Campylomormyrus rhynchophorus
DOI:
doi:10.5061/dryad.n571m
摘要:
in the reference barcode library of the Barcode of Life Initiative.

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