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Data from: Bayesian total-evidence dating reveals the recent crown radiation of penguins
负责人:
关键词:
divergence times;MCMC;phylogenetics;birth-death process;calibration
DOI:
doi:10.5061/dryad.44pf8
摘要:
l occurrence dates. We incorporate the FBD model and a model of morphological trait evolution into a Bayesian total-evidence approach to dating species
Data from: Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders
负责人:
关键词:
Total Evidence;molecular clock;Biogeography;Pangaea;divergence time estimation;fossils;vicariance;Gondwana
DOI:
doi:10.5061/dryad.7231d
摘要:
tral biogeographic ranges is then performed, using likelihood and Bayesian methods to take into account uncertainty in phylogeny and in dating. We find that treatin
Data from: The impact of phylogenetic dating method on interpreting trait evolution: a case study of Cretaceous–Palaeogene eutherian body-si
负责人:
关键词:
Placentalia;Mammalia;tempo;Body Size;evolutionary model;mode;Palaeogene;Cretaceous
DOI:
doi:10.5061/dryad.7tp7f
摘要:
are highly sensitive to topology. Release or release–radiate models are preferred when Bayesian fossilized birth–death method is used, but when usi
Data from: Tip-dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil record
负责人:
关键词:
tip-dating;Thoracosauridae;Crocodylia;Gavialis;parsimony;phylogenetics;Bayesian inference;Archosauria;stratigraphy;Crocodylidae;Tomistoma
DOI:
doi:10.5061/dryad.3d23687
摘要:
ed Bayesian methods) are unable to tease apart these similarities and invariably unite thoracosaurs and Gavialis. However, tip-dated Bayesian approaches additi
Data from: Bayesian phylogenetic estimation of clade ages supports trans-atlantic dispersal of cichlid fishes
负责人:
关键词:
Jurassic;marine dispersal;fossil record;Cichlidae;phylogeny;Bayesian inference;calibration density;Cretaceous;Cenozoic;Teleostei;relaxed molecular clock
DOI:
doi:10.5061/dryad.1q994
摘要:
ons of evolutionary biology. In Bayesian node dating, phylogenies are commonly time calibrated through the specification of calibration densities on nodes representing clades
Data from: Multiple global radiations in tadpole shrimps challenge the concept of ‘living fossils’
负责人:
关键词:
bayesian analysis;divergence time;Paleozoic;Mesozoic;'living fossil';Biogeography;Notostraca;Triops;diversification;Lepidurus;fossil;Cenozoic
DOI:
doi:10.5061/dryad.77bt2
摘要:
locus phylogeny of Branchiopoda and applying Bayesian divergence dating techniques using reliable fossil calibrations external to Notostraca. Our results suggest at least two bouts
Data from: TipDatingBeast: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
负责人:
关键词:
phylogenetic tip-dating;Phylogenetic Theory and Methods;phylogeography;molecular evolution;Bioinfomatics\/Phyloinfomatics;Measurably-evolving populations (MEPs);BEAST;date-randomization test;leave-one-out cross-validation
DOI:
doi:10.5061/dryad.43q71
摘要:
mate the timing of evolutionary events with rates of molecular evolution. In this context, BEAST, a program for Bayesian analysis of molecular sequences, is the mos
Data from: Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale
负责人:
关键词:
Genome;Triassic;Chloroplast;Angiospermae;molecular dating;co-evolution
DOI:
doi:10.5061/dryad.3vj50
摘要:
, to evaluate the impact of models, priors, and gene sampling on Bayesian estimates of the angiosperm evolutionary timescale. Using a Bayesian relaxed molecular
Data from: Contemporary genetic structure and postglacial demographic history of the black scorpionfish, Scorpaena porcus, in the Mediterranean
负责人:
关键词:
approximate Bayesian computation;connectivity;genetic differentiation;scorpionfish;Population Expansion;Bayesian clustering
DOI:
doi:10.5061/dryad.8fv83
摘要:
e analysed using traditional population genetic approaches together with Bayesian dating and the more recent approximate Bayesian computation scenario testin
Data from: Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model
负责人:
关键词:
Placentalia;ancestral reconstruction;Comparative Methods;molecular clock;Mammalia;independent contrasts;Bayesian inference;Cenozoic
DOI:
doi:10.5061/dryad.tt28qk6f
摘要:
and substitution rates could be used as an additional source of information. In this direction, a Bayesian framework for jointly reconstructing rates, traits, and dates

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