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Data from: Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms
负责人:
关键词:
parsimony;large data sets;phylogeny
DOI:
doi:10.5061/dryad.64
摘要:
and combined DNA data sets for 190 angiosperms and three outgroups. Separate data sets of 18S rDNA (1,855 bp), rbc L (1,428 bp), and atp B (1,450 bp) sequences
Data from: Molecular phylogeny of rhynchonellide articulate brachiopods (Brachiopoda, Rhynchonellida)
负责人:
关键词:
Rhynchonelliformea;Palaeozoic;Holocene;phylogeny;Mesozoic
DOI:
doi:10.5061/dryad.79411
摘要:
We present here the first report based on phylogenetic analyses of small subunit (SSU/18S) and large subunit (LSU/28S) ribosomal DNA (rDNA) sequences
Data from: ITS all right mama: Investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock
负责人:
关键词:
DNA metabarcoding;Chimeric sequences;PCR bias;UCHIME;microbial ecology
DOI:
doi:10.5061/dryad.n4cv3
摘要:
rDNA region ITS. Due to a larger research community, tools for chimera detection have been developed mainly for the 16S/18S markers. However, these tools
Data from: Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing
负责人:
关键词:
Environmental DNA;metagenomics;Protists;Microbial Biology;Pavlovophyceae;Prymnesiophyceae;haptophytes;Bioinfomatics\/Phyloinfomatics;Haptophyta;population dynamics
DOI:
doi:10.5061/dryad.b8d21
摘要:
monthly for 2 years, and the haptophytes targeted by amplification of RNA/cDNA with Haptophyta-specific 18S rDNA V4 primers. We obtained 156
Data from: Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient
负责人:
关键词:
Environmental DNA;Demospongiae;Anthozoa;Environmental DNA;Next-generation sequencing;18S ribosomal DNA;Invertebrate;Demospongiae;Holocene;Marine
DOI:
doi:10.5061/dryad.37qv5rd
摘要:
subtropical biodiversity along a depth gradient at two coral reefs in Okinawa, Japan based on 18S rRNA. Results. Using 18S rRNA metabarcoding, we found tha
Data from: High-throughput sequencing of nematode communities from total soil DNA extractions
负责人:
关键词:
Agriculture;nematode;soil;Nematoda
DOI:
doi:10.5061/dryad.0h653
摘要:
of nematodes. Keywords: nematode, community, next-generation sequencing, SSU, diversity, 18S, rDNA
Data from: Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity
负责人:
关键词:
Fungi;DNA Barcoding;systematics;charophytes;rhodophytes;Plantae;chlorophytes;Angiosperms;Ferns & Allies;bryophytes;Gymnosperms;land plants
DOI:
doi:10.5061/dryad.p3ks4
摘要:
The internal transcribed spacer (ITS) of nuclear ribosomal DNA is one of the most commonly used DNA markers in plant phylogenetic and DNA
Data from: Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation
负责人:
关键词:
phylogenetic resolution;hypothesis testing;Saxifragales;ribosomal DNA;data partition congruence;rapid radiation;chloroplast genes;maximum likelihood estimation
DOI:
doi:10.5061/dryad.684
摘要:
aligned bp from five genes (chloroplast atpB, matK, rbcL, and 18S and 26S nrDNA) to elucidate relationships among major lineages of Saxifragales
Data from: Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences
负责人:
关键词:
large molecular datasets;complex phylogenies;Angiosperm;atpB;rbcL
DOI:
doi:10.5061/dryad.564
摘要:
for 357 taxa. Despite some discrepancies, the atpB-based phylogenetic trees were highly congruent with those derived from the analysis of rbcL and 18S rDNA

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