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Data from: Identification of habitat-specific biomes of aquatic fungal communities using a comprehensive nearly full-length 18S rRNA dataset enriched
- 负责人：
- DOI：
- doi:10.5061/dryad.7fv64
- 摘要：
- l publicly available fungal 18S ribosomal RNA (rRNA) gene sequences with new sequence data from a marine fungi culture collection. We further enriched
Data from: 18S rRNA metabarcoding diet analysis of the predatory fish community across seasonal changes in prey availability
- 负责人：
- DOI：
- doi:10.5061/dryad.0jm1dt2
- 摘要：
- molecular techniques using genetic data can provide more accurate estimates of relative diet composition. This study used sequences from the 18S V9 rRNA barcoding
Data from: Phylogeographic analysis of Ligia oceanica (Crustacea: Isopoda) reveals two deep divergent mitochondrial lineages
- 负责人：
- DOI：
- doi:10.5061/dryad.mg606
- 摘要：
- o sequenced the hypervariable V7 expansion segment of the nuclear 18S rRNA gene as a supplementary marker. Furthermore, we studied the infection rate of al
Data from: Molecular phylogeny and symbiotic selectivity of the green algal genus Dictyochloropsis sensu lato (Trebouxiophyceae): a polyphyletic and widespread group forming photobiont-mediated guilds in the lichen family Lobariaceae
- 负责人：
- DOI：
- doi:10.5061/dryad.4q6b9
- 摘要：
- strains and several lichen photobionts, using 18S rRNA, rbcL and ITS sequence data. We further used seven alga-specific microsatellite markers to study
Data from: Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient
- 负责人：
- DOI：
- doi:10.5061/dryad.37qv5rd
- 摘要：
- subtropical biodiversity along a depth gradient at two coral reefs in Okinawa, Japan based on 18S rRNA. Results. Using 18S rRNA metabarcoding, we found tha
Data from: Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments
- 负责人：
- DOI：
- doi:10.5061/dryad.vd094
- 摘要：
- eukaryote communities, intragenomic variation in rRNA gene copies and the patchy coverage of reference databases currently present substantial challenges
Data from: Oral samples as non-invasive proxies for assessing the composition of the rumen microbial community
- 负责人：
- DOI：
- doi:10.5061/dryad.1b07d
- 摘要：
- and by sequencing 16S and 18S rRNA genes or the fungal ITS1 amplicons. Faeces contained few protozoa, and bacterial, fungal and archaeal communities were subst
Data from: A novel real-world ecotoxicological dataset of pelagic microbial community responses to wastewater
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.2fqz612km
- 摘要：
- .? Flow cytometry, amplicon sequencing?of?16S and 18S rRNA genes and micro-fluidic quantitative polymerase-chain reactions (MFQPCR) were used to determine chlorophyll
Data from: Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill
- 负责人：
- DOI：
- doi:10.5061/dryad.4sd51d4b
- 摘要：
- Benthic habitats harbour a significant (yet unexplored) diversity of microscopic eukaryote taxa, including metazoan phyla, protists, algae and fungi. These groups are thought to underpin ecosystem functioning across diverse marine environments. Coastal marine habitats in the Gulf of Mexico experienced visible, heavy impacts following the Deepwater Horizon oil spill in 2010, yet our scant knowledge of prior eukaryotic biodiversity has precluded a thorough assessment of this disturbance. Using a marker gene and morphological approach, we present an intensive evaluation of microbial eukaryote communities prior to and following oiling around heavily impacted shorelines. Our results show significant changes in community structure, with pre-spill assemblages of diverse Metazoa giving way to dominant fungal communities in post-spill sediments. Post-spill fungal taxa exhibit low richness and are characterized by an abundance of known hydrocarbon-degrading genera, compared to prior communities that contained smaller and more diverse fungal assemblages. Comparative taxonomic data from nematodes further suggests drastic impacts; while pre-spill samples exhibit high richness and evenness of genera, post-spill communities contain mainly predatory and scavenger taxa alongside an abundance of juveniles. Based on this community analysis, our data suggest considerable (hidden) initial impacts across Gulf beaches may be ongoing, despite the disappearance of visible surface oil in the region.
Data from: Exploring the impact of habitat size on phylogeographic patterning in the Overberg velvet worm Peripatopsis overbergiensis (Onychophora: Peripatopsidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.15f51
- 摘要：
- ) locus, whereas a subset of 13 specimens were also sequenced for the 18S rRNA locus. Phylogenetic analyses of the 20 unique COI haplotypes revealed
