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Data from: Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography
负责人:
关键词:
2009;H5N1;2006-2015;XML;Egypt;MCC Trees;pdm09;MCMC Trees;BEAST
DOI:
doi:10.5061/dryad.7jr85rj
摘要:
formed posterior analyses for each scenario, including: (a) virus persistence, (b) migration rates, (c) trunk rewards, and (d) the posterior probability of the ro
Data from: Assessing parameter identifiability in phylogenetic models using Data Cloning
负责人:
关键词:
Data Cloning;Bayesian estimation in Phylogenetics;Parameter Identifiability;maximum likelihood
DOI:
doi:10.5061/dryad.rr6400b4
摘要:
ty while investigating complex modeling scenarios, where getting closed-form expressions in a probabilistic study is complicated. Furthermore, here we also show how DC
Data from: ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps
负责人:
关键词:
Rate of asexuality;sel?ng;Rate of asexuality;temporal inference;instantaneous inference;Inbreeding;Inbreeding;population genetics model;free software
DOI:
doi:10.5061/dryad.32qh8
摘要:
grating reproductive modes. Our model provides posterior probability distribution of inferred c, given the assumed rates of mutation, as well as inbreeding and selfing
Data from: Abundance estimation with sightability data: a Bayesian data augmentation approach
负责人:
关键词:
abundance aerial survey marked animals sightability data wildlife
DOI:
doi:10.5061/dryad.f8669
摘要:
ny inferential advantages,including the ability to incorporate prior information and perform exact inference with small samples.More importantly,themodel-based appro
Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets
负责人:
关键词:
Bayesian model comparison;Bacterial species;Bacillus;Multilocus species delimitation;Dynamic programming;present
DOI:
doi:10.5061/dryad.3cb25
摘要:
by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of al
Data from: Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses
负责人:
关键词:
information content;Bayes factors;Bias;turtles;ultraconserved elements;amniotes;posterior probability;phylogenomics;Expressed Sequence Tags;Negative Constraints;ortholog
DOI:
doi:10.5061/dryad.8gm85
摘要:
h as Markov chain Monte Carlo estimates of posterior probabilities). Bayes factors reveal important, previously hidden, differences across six “phylogenomic” data sets collecte
Data from: Modern pollen from small hollows reflects Athrotaxis cupressoides density across a wildfire gradient in subalpine forests of the Central
负责人:
关键词:
discriminant analysis;Athrotaxis cupressoides;pollen;small hollows;wildfire;Charcoal;Holocene
DOI:
doi:10.5061/dryad.1bp06
摘要:
methods to classify samples with unknown group assignments. The posterior probability of assigned group membership ranged from 0.85 to 0.99, demonstrating
Data from: Full Bayesian comparative phylogeography from genomic data
负责人:
关键词:
Bayesian model choice;Neogene;Gekko crombota;Gekko mindorensis;Biogeography;Quaternary;Gekko rossi;Dirichlet-process prior;phylogeography
DOI:
doi:10.5061/dryad.4b3j2bj
摘要:
constant characters allows the new method to robustly estimate the correct number of divergence events with high posterior probability in the fac
Data from: Accurate inference of tree topologies from multiple sequence alignments using deep learning
负责人:
关键词:
Supervised Machine Learning;convolutional neuronal network;phylogenetics
DOI:
doi:10.5061/dryad.ct2895s
摘要:
e accurately assess support for the chosen topology than bootstrap and posterior probability scores from traditional methods. While numerous practical challenges
Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
负责人:
关键词:
phylogenetic analysis;morphology;Mk Model;parsimony;Bayesian;maximum likelihood
DOI:
doi:10.5061/dryad.8dd39
摘要:
yesian posterior probabilities, collapsing branches that exhibit less than 50% support. Ignoring node support, Bayesian inference is the most accurate method in estimating

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