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Data from: Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution
- 负责人：
- DOI：
- doi:10.5061/dryad.3hc5t
- 摘要：
- a comprehensive analysis of synonymous codon usage patterns in MARV genomes. Multiple codon analysis approaches and statistical methods were performed to determine ove
Data from: Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias
- 负责人：
- DOI：
- doi:10.5061/dryad.7b470
- 摘要：
- , and in their usage of synonymous codon variants. Composition heterogeneous Bayesian analyses employing a non-stationary model that accounts for variation in amo
Data from: Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly
- 负责人：
- DOI：
- doi:10.5061/dryad.sv70f
- 摘要：
- of hierarchical linear models of codon usage, expression pattern and codon pair preference pointed to the fact that, in the archaea there is a trend towards biased use of
Data from: Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates
- 负责人：
- DOI：
- doi:10.5061/dryad.4k887
- 摘要：
- Synonymous codon usage (SCU) patterns are shaped by a balance between mutation, drift, and natural selection. To date, detection
Data from: Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study
- 负责人：
- DOI：
- doi:10.5061/dryad.7p1k8304
- 摘要：
- with the topology derived from the nucleotides, but not the amino acids. We suggest that a parallel, partially compositionally driven, synonymous codon-usage bias
Data from: A pair of nonoptimal codons are necessary for the correct biosynthesis of the Aspergillus nidulans urea transporter, UreA
- 负责人：
- DOI：
- doi:10.5061/dryad.56kv356
- 摘要：
- Both in prokaryotic and eukaryotic genomes synonymous codons are unevenly used. Such differential usage of optimal or nonoptimal codons ha
Data from: Gene expression levels are correlated with synonymous codon usage, amino acid composition and gene architecture in the red flour beetle
- 负责人：
- 关键词：
- translational selection;gene structure;size\/complexity score;Tribolium castaneum;tRNA abundance
- DOI：
- doi:10.5061/dryad.r0t1q
- 摘要：
- ne expression on synonymous codon usage, amino acid composition and gene structure in the red flour beetle, Tribolium castaneum. Consistent with the action of translational selection
Data from: Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms
- 负责人：
- DOI：
- doi:10.5061/dryad.9118
- 摘要：
- % higher values and less codon usage bias in symbiont compared to reference genomes. Relaxation was not evenly distributed among functional ge
Data from: Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis.
- 负责人：
- Nabholz, Benoit
- 关键词：
- DOI：
- doi:10.5061/dryad.82181
- 摘要：
- years of intensive usage, the extent of mitochondrial evolutionary rate variations across species, their practical consequences on sequence analysis method
Data from: Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood
- 负责人：
- DOI：
- doi:10.5061/dryad.7sb0f
- 摘要：
- and intronic sites were enriched for outliers compared with coding regions, while no outliers were found among intergenic sites. Codon usage bias was evident
