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Data from: Phylogenomics resolves the timing and pattern of insect evolution
- 负责人：
- DOI：
- doi:10.5061/dryad.3c0f1
- 摘要：
- the phylogeny of insects from 1478 protein-coding genes. Phylogenomic analyses of nucleotide and amino acid sequences, with site-specific nucleotide or domain
Data from: Exon capture phylogenomics: efficacy across scales of divergence
- 负责人：
- DOI：
- doi:10.5061/dryad.34274
- 摘要：
- . High Throughput Sequencing (HTS) is now providing opportunities to incorporate thousands of loci in ‘phylogenomic’ studies. Here, we used target enrichment to sequence c.3000
Data from: A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.
- 负责人：
- 关键词：
- DOI：
- doi:10.5061/dryad.mt620
- 摘要：
- repertoire. Our genomic survey and phylogenetic analysis clarifies the origin and evolution of different HECT families among eukaryotes and provides a use
Data from: Incomplete lineage sorting in mammalian phylogenomics
- 负责人：
- DOI：
- doi:10.5061/dryad.1m3s2
- 摘要：
- and conditions of applicability of ILS-aware methods in phylogenomic analyses of protein coding sequences.
Data from: Palaeoproteomics resolves sloth phylogeny
- 负责人：
- DOI：
- doi:10.5061/dryad.7dd64gs
- 摘要：
- only a minor role in folivoran systematics, as most sloths lived in places not conducive to genomic preservation. Here we utilize collagen sequence information
Data from: A proteomic strategy for global analysis of plant protein complexes
- 负责人：
- DOI：
- doi:10.5061/dryad.3r8p4
- 摘要：
- ng size exclusion chromatography, we identified hundreds of cytosolic proteins that appeared to exist as components of stable protein complexes. The reliability of the method
Data from: The relative importance of modeling site pattern heterogeneity versus partition-wise heterotachy in phylogenomic inference
- 负责人：
- DOI：
- doi:10.5061/dryad.68qt629
- 摘要：
- , it is more important to model site-heterogeneity than protein-wise heterotachy in phylogenomic analyses. Complete protein-wise partitioning should be avoided
Data from: Phylogenomics from whole genome sequences using aTRAM
- 负责人：
- DOI：
- doi:10.5061/dryad.26j38
- 摘要：
- . We aligned these protein sequences with the inferred amino acids and then performed phylogenetic analyses on both the concatenated matrix of genes and on each ge
Data from: A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mi
- 负责人：
- 关键词：
- Mesodinium;Litostomatea;ciliate phylogenomics;mixed-species transcriptomes;sequence contamination
- DOI：
- doi:10.5061/dryad.zw3r22848
- 摘要：
- and to generate the most taxonomically-rich phylogenomic ciliate tree to date.? Regardless of the data mining strategy, the multi-protein dataset
Data from: A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mi
- 负责人：
- 关键词：
- Mesodinium;Litostomatea;ciliate phylogenomics;mixed-species transcriptomes;sequence contamination
- DOI：
- doi:10.5061/dryad.n02v6wwsg
- 摘要：
- and to generate the most taxonomically-rich phylogenomic ciliate tree to date.? Regardless of the data mining strategy, the multi-protein dataset
