Data from: Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

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关键词：

Arabidopsis;genomics;DNA methylation;Transposable elements;epigenetics

DOI：

doi:10.5061/dryad.187b3

摘要：

ified 23,095 TE presence/absence variants between 216 Arabidopsis accessions. Most TE variants were rare, and we find these rare variants associa

/absence variants

负责人：

Joets, Johann

关键词：

maize structural variation pan-genome Presence Absence Variation - PAV European germplasm

DOI：

doi:10.5061/dryad.f81sj

摘要：

Maize is well known for its exceptional structural diversity, including copy number variants (CNVs) and presence/absence variants (PAVs), and ther

Data from: An updated gene atlas for maize reveals organ-specific and stress-induced genes

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关键词：

B73 AGPv4 differential expression co‐expression presence‐absence variants gene atlas

DOI：

doi:10.5061/dryad.5p58q34

摘要：

tion based on co‐expression patterns. Presence/absence variants (PAVs) previously identified using whole genome resequencing data from 61 additional

Data from: Additive effects of plant chemotype, mutualistic ants and predators on aphid performance and survival

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关键词：

Metopeurum fuscoviride;Tanacetum vulgare;tritrophic interaction;relative effects;Lasius niger;bottom-up;exclusion experiment;Holocene;Top-down;mutualism

DOI：

doi:10.5061/dryad.g9n85sm

摘要：

population dynamics by manipulating the presence/absence of mutualistic ants and presence/absence of naturally-occurring predators (i.e. top-down). 3. Pr

Data from: Multiple maize reference genomes impact the identification of variants by GWAS in a diverse inbred panel

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关键词：

DOI：

doi:10.5061/dryad.dk22g4h

摘要：

sion. This limitation can complicate identification and characterization of genes located within presence/absence variations (PAVs). In this study, we present the draft

Data from: Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

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关键词：

Exome Capture;PRJNA280418;Switchgrass;polyploid;genomics;Panicum virgatum

DOI：

doi:10.5061/dryad.nh8ph

摘要：

to the near-reference Kanlow population, 17,228 up-copy number variants (CNVs), 112,630 down-CNVs, and 14,430 presence/absence variants (PAV) impacting

Data from: Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

负责人：

关键词：

exome capture switchgrass polyploid genomics PRJNA280418

DOI：

doi:10.5061/dryad.nh8ph.1

摘要：

to the near-reference Kanlow population, 17,228 up-copy number variants (CNVs), 112,630 down-CNVs, and 14,430 presence/absence variants (PAV) impacting

Data from: Genome-wide association analyses in the model rhizobium Ensifer meliloti

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关键词：

association mapping;Legumes;Medicago truncatula;genetic architecture;GWAS;linkage disequilibrium;genomics;phenotypic variation;mutualism;Ensifer meliloti;rhizobia;BSLMM;antibiotic resistance;nitrogen fixation;bacteria;heritability;Chip heritability;Holocene

DOI：

doi:10.5061/dryad.tn6652t

摘要：

-absence variation (PAV), and for five traits, candidates are enriched in large linkage groups, a possible signature of epistasis. Many of the variants mos

Data from: Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae)

负责人：

关键词：

Arabis alpina<\/i>;Single-nucleotide polymorphisms;linkage disequilibrium;whole-genome re-sequencing;Arabis alpina;Transposable elements;Genome-wide diversity