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Data from: Posterior predictive Bayesian phylogenetic model selection
负责人:
关键词:
posterior predictive;Bayesian;model selection;phylogenetics;L-measure;conditional predictive ordinate;log pseudomarginal likelihood
DOI:
doi:10.5061/dryad.6b7c1
摘要:
We present two distinctly different posterior predictive approaches to Bayesian phylogenetic model selection, and illustrate these methods usi
Data from: Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit
负责人:
关键词:
Simulation;Markov chain Monte Carlo;Bayesian;phylogenetic;Posterior Predictive Distribution;Sequence Evolution;model fit
DOI:
doi:10.5061/dryad.nc866
摘要:
s. The field of phylogenetics lacks a direct method to identify cases where model specification adversely affects inferences. Posterior predictive simulati
Data from: Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution
负责人:
关键词:
Predictive Simulations;early burst;Comparative Methods;Adaptive Radiations;Quantitative Characters
DOI:
doi:10.5061/dryad.sp521
摘要:
t allow greater power to detect early bursts in simulated datasets. First, we develop posterior predictive simulation approaches and show tha
Data from: Posterior predictive checks of coalescent models: P2C2M, an R package
负责人:
关键词:
Multispecies coalescent;phylogeography;species trees;posterior predictive simulation
DOI:
doi:10.5061/dryad.n715n
摘要:
on can be challenging to evaluate. Here, we introduce a novel r package that utilizes posterior predictive simulation to evaluate the fit of the multi
Data from: Bayesian hierarchical models for spatially misaligned data in R
负责人:
关键词:
DOI:
doi:10.5061/dryad.3g9s2
摘要:
probability models capable of estimating parameter posterior distributions and propagating uncertainty through to outcomes' predictive distributions at locations wher
Data from: Can we identify genes with increased phylogenetic reliability?
负责人:
关键词:
posterior prediction;molecular clock;Systematic error;rate of evolution;phylogenomics
DOI:
doi:10.5061/dryad.fd3m4
摘要:
h genes is not well established. Here, we ask if filtering genes according to their clock-likeness or posterior predictive effect size (PPES, an inference-based measure of model
Data from: Selection towards different adaptive optima drove the early diversification of locomotor phenotypes in the radiation of Neotropic
负责人:
关键词:
Comparative Methods;chronograms;Adaptive landscape;cichlid;swimming morphology;locomotor morphology;adaptive peak;Body Size;Geophagini;early burst;functional diversity;Posterior distribution;MCC tree
DOI:
doi:10.5061/dryad.vm263
摘要:
constraints on phenotypic divergence in general. Results: We use multivariate ordination models of phenotypic evolution and posterior predictive approaches to investigate
Data from: Phylodynamic model adequacy using posterior predictive simulations
负责人:
关键词:
Bayesian phylogenetics;Viral evolution;posterior predictive simulation;BEAST2;Phylodynamics;model adequacy
DOI:
doi:10.5061/dryad.65p331m
摘要:
ocesses occur, such that it is possible to make inferences about their infectious spread using phylogenetic time-trees. For this purpose it is necessary to choose
Data from: Assessing the performance of DNA barcoding using posterior predictive simulations
负责人:
关键词:
biodiversity;clustering algorithms;Operational Taxonomic Units;model adequacy;substitution models;genetic distances
DOI:
doi:10.5061/dryad.pg470
摘要:
the Barcode of Life Database and posterior predictive simulations to assess the performance of DNA barcoding under commonly used substitution models

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