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Data from: Body mass-corrected molecular rate for bird mitochondrial DNA
负责人:
关键词:
mitochondrial;body mass;Birds;phylogeny;Aves;molecular clock
DOI:
doi:10.5061/dryad.1040d
摘要:
according to a strict molecular clock. This molecular clock is often used in studies of bird mitochondrial phylogeny and molecular dating. Howeve
Data from: The local-clock permutation test: a simple test to compare rates of molecular evolution on phylogenetic trees
负责人:
关键词:
molecular clock;substitution rate;likelihood ratio test;LCPT;mutation rate;LRT
DOI:
doi:10.5061/dryad.7886
摘要:
of this variation. Comparing local-clocks (rates of molecular evolution estimated from sets of branches of a phylogenetic tree) is a common tool in this resear
Data from: Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.
负责人:
关键词:
Placentalia;vWF;Rodentia;A2AB;Eutheria;Mammalia;Supermatrix;IRBP;Glires;phylogeny;molecular dating;maximum likelihood;Cenozoic
DOI:
doi:10.5061/dryad.8502
摘要:
of molecules is the evolutionary rate variation among lineages, precluding the application of the global molecular clock. We considered 2422 first and sec
Data from: Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
负责人:
关键词:
Actinopterygii;Cichlidae;Eocene;Cretaceous;Homoplasy;Jurassic;Devonian;Triassic;Acanthomorpha;Nucleotide Saturation;Cenozoic;Tetraodontiformes;Teleostei;molecular clock
DOI:
doi:10.5061/dryad.3rq51
摘要:
estimates. Analyses of actinopterygian molecular clocks demonstrate that scrutiny of the time scale on which sequence data is informative is a fundamental
Data from: Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution
负责人:
关键词:
MCMCTREE;molecular clock;Bayesian phylogenetics;fossil record;sampling bias
DOI:
doi:10.5061/dryad.5706p
摘要:
ormation about absolute times in molecular clock dating analyses. Thus, fossil calibrations are critical to molecular clock dating, but competing methods are difficu
Data from: Major radiations in the evolution of caviid rodents: reconciling fossils, ghost lineages, and relaxed molecular clocks
负责人:
关键词:
Cavioidea sensu stricto;morphology;DNA sequences;Eocardiidae;Hydrochoerinae;\Eocardiidae\;Caviinae;Dolichotinae;TNT;Cenozoic;Caviidae
DOI:
doi:10.5061/dryad.v5p71
摘要:
e, evaluating the time of diversification of selected nodes based on the calibration of phylogenetic trees with fossil taxa and the use of relaxed molecular clocks
Data from: A multilocus timescale for oomycete evolution estimated under three distinct molecular clock models
负责人:
关键词:
Paleozoic;Mesozoic;molecular clock;Pythium;divergence times;Gene Regulation;oomycetes;Phytophthora;Bayesian inference
DOI:
doi:10.5061/dryad.39mc5
摘要:
Background: Molecular clock methodologies allow for the estimation of divergence times across a variety of organisms; this can be particularly use
Data from: Molecular paleobiology of early-branching animals integrating DNA and fossils elucidates the evolutionary history of hexactinellid
负责人:
Woerheide, Gert
关键词:
molecular paleobiology molecular clocks Bayesian
DOI:
doi:10.5061/dryad.sm01b
摘要:
exactinellida in a Bayesian relaxed molecular clock framework. With some notable exceptions, our results are largely congruent with interpretations of the hexactinellid
Data from: The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
负责人:
Douzery, Emmanuel J. P.
关键词:
Supermatrix Eukaryotes Phylogeny Timescale Molecular dating
DOI:
doi:10.5061/dryad.8499
摘要:
. Due to significant variations in their evolutionary rates, and to handle the uncertainty of the fossil record, we used a Bayesian relaxed molecular clock
Data from: Mitochondrial rate variation among lineages of passerine birds
负责人:
关键词:
Passeriformes;molecular clock;substitution rate;mitochondrial genome;Aves
DOI:
doi:10.5061/dryad.1h669
摘要:
variation in rates across passerine lineages. This lends support to its widespread use as a molecular clock in birds. However, we also found that the patterns

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