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Data from: Lessons learned from microsatellite development for non-model organisms using 454 pyrosequencing
负责人:
关键词:
Comparative studies;shotgun sequencing;next generation sequencing technology;population genetics;massively parallel sequencing;conservation genetics
DOI:
doi:10.5061/dryad.22p7m
摘要:
equencing is a straightforward approach to develop a high number of microsatellite markers. Therefore, developing microsatellites using 454 pyrosequencing has become the method
Data from: Rapid microsatellite isolation from a butterfly by de novo transcriptome sequencing: performance and a comparison with AFLP-derived
负责人:
关键词:
Euphydryas editha;454;SSR;Next-generation sequencing;EST;variable number sequence repeats;simple sequence repeats;VNTR
DOI:
doi:10.5061/dryad.1540
摘要:
of microsatellite markers has been particularly difficult, as many markers appear to be located in repetitive DNA and have nearly identical flanking regions. We attempte
Data from: High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity
负责人:
关键词:
faecal DNA;Ursus arctos;individual identification;parentage analysis;high-throughput sequencing;short tandem repeat (STR)
DOI:
doi:10.5061/dryad.18tg7
摘要:
by genotyping brown bear samples amplified with a multiplex PCR of 13 new microsatellite markers and a sex marker. HTS of microsatellites provided accurate
Data from: Multilocus microsatellite markers for molecular typing of Candida tropicalis isolates
负责人:
关键词:
2 years;phylogenetic tree;Candida trpicalis
DOI:
doi:10.5061/dryad.8497b
摘要:
of this study was to develop new microsatellite loci that have the ability to distinguish among C. tropicalis isolates. Results: DNA sequences containing over 10
Data from: High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
负责人:
Malausa, Thibaut
关键词:
Population Genetics - Empirical Genomics/Proteomics Bioinfomatics/Phyloinfomatics Fungi Insects genetic markers
DOI:
doi:10.5061/dryad.8297
摘要:
Microsatellites (or SSR: simple sequence repeat) are among the most frequently used DNA markers in many areas of research. The us
Data from: Microsatellite analyses across three diverse vertebrate transcriptomes (Acipenser fulvescens, Ambystoma tigrinum, and Dipodomys
负责人:
关键词:
Acipenser fulvescens;repeat motif;Dipodomys spectabilis;454 pyrosequencing;genomics;Ambystoma tigrinum;coding region
DOI:
doi:10.5061/dryad.49s43
摘要:
Historically, many population genetics studies have utilized microsatellite markers sampled at random from the genome and presumed to be selectively
Data from: SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data
负责人:
关键词:
microsatellite discovery;Next Generation Sequencing;Ephydra packardi;Python
DOI:
doi:10.5061/dryad.n65k2
摘要:
SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (e.g., microsatellites) from paired-end high

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