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Data from: An improved hypergeometric probability method for identification of functionally linked proteins using phylogenetic profiles
负责人:
关键词:
Protein function prediction;functional similarity;phylogenetic profiles;functional annotation
DOI:
doi:10.5061/dryad.m6t4j
摘要:
. Phylogenetic profiling is a bioinformatics approach to identify the influence of a trait across species and can be employed to infer the evolutionary history
Data from: High throughput functional genomics identifies modulators of TCE metabolite genotoxicity and candidate susceptibility genes
负责人:
关键词:
trichloroethylene;toxicogenomics;DNA damage and repair mechanisms;susceptibility genes;high-throughput testing;Saccharomyces cerevisiae
DOI:
doi:10.5061/dryad.p8k18
摘要:
unclear. We employed an integrated functional genomics approach that combined functional profiling studies in yeast and avian DT40 cell models to provide ne
Data from: Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency
负责人:
关键词:
DOI:
doi:10.5061/dryad.r32t3
摘要:
nomic profiles during differentiation of mouse multipotent bone marrow stromal cell line (ST2) toward adipocytes and osteoblasts. Using our novel appro
Data from: Transcriptome profiling of maternal stress-induced wing dimorphism in pea aphids
负责人:
关键词:
Alarm Pheromone;crowding;maternal stress;pea aphid;predation;transcriptome profiling;wing dimorphism
DOI:
doi:10.5061/dryad.55b2b15
摘要:
revealed different changes in maternal gene expression as induced by the three stressors. Crowding elicited widespread changes in the expression of genes
Data from: Transcriptional profiling of the murine airway response to acute ozone exposure
负责人:
关键词:
lung;mouse;inflammation;Transcriptomics;air pollution;injury;Ozone
DOI:
doi:10.5061/dryad.31nb080
摘要:
gene expression profiling of CA and AM by RNA-seq. As expected, we observed concentration-dependent increases in airway inflammation and injury. CA and AM both exhibited cha
Data from: Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
负责人:
关键词:
translation;Ribosome;Stop codon;Homo Sapiens;Readthrough;drosophila melanogaster;Saccharomyces cerevisiae;Ribosome profiling
DOI:
doi:10.5061/dryad.6nr73
摘要:
readthrough in eukaryotes remains largely unexplored. Here, we present a ribosome profiling assay (deep sequencing of ribosome-protected mRNA fragments
Data from: A genes eye view of ontogeny: De novo assembly and profiling of the Gryllus rubens transcriptome
负责人:
关键词:
insects;Transcriptomics;Development and Evolution;Invertebrates
DOI:
doi:10.5061/dryad.7n10n
摘要:
to 41%. Pooled samples from three different ontogenetic stages were used for transcriptomic profiling of the annotated transcriptome revealing patterns
Data from: Dissecting signal and noise in diatom chloroplast protein encoding genes with phylogenetic information profiling
负责人:
关键词:
partitioned Bremer support;3rd codon position;diatoms;phylogenetic information profiling;chloroplast genes;substitutional saturation;entropy analysis;phylogenetic signal
DOI:
doi:10.5061/dryad.610md
摘要:
to effectively sum their collective signal. We empirically demonstrated the value of combining phylogenetic information profiling, partitioned Bremer support

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