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Data from: Efficient exploration of the space of reconciled gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.pv6df
- 摘要：
- and extinction. Gene tree-species tree reconciliation methods model these processes by drawing gene trees into the species tree using a series of gene and species
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
- 负责人：
- DOI：
- doi:10.5061/dryad.74922
- 摘要：
- ely, gene duplication and loss, incomplete lineage sorting or horizontal gene transfer. In this manuscript we address for the first time the problem of species tree
Data from: Gene-tree reconciliation with MUL-trees to resolve polyploidy events
- 负责人：
- DOI：
- doi:10.5061/dryad.pp837
- 摘要：
- Polyploidy can have a huge impact on the evolution of species, and it is a common occurrence, especially in plants. The two types of polyploids
Data from: Lateral gene transfer from the dead
- 负责人：
- DOI：
- doi:10.5061/dryad.27d0g
- 摘要：
- ty of a gene tree and recover the maximum likelihood reconciliation given the phylogeny of the sampled species. Examining 473 near universal gene families from
Data from: Integrating sequence evolution into probabilistic orthology analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.4r910
- 摘要：
- g species tree, (most commonly performed using the most parsimonious reconciliation, MPR). However, most such phylogenetic orthology methods infer the gene tree
Data from: Diversification of Hawaiian Cyrtandra (Gesneriaceae) under the influence of incomplete lineage sorting and hybridization
- 负责人：
- DOI：
- doi:10.5061/dryad.s7h937n
- 摘要：
- t 33 Hawaiian Cyrtandra samples for species relationships and hybridization in the presence of incomplete lineage sorting (ILS). Both conc
Data from: TreeFix: statistically informed gene tree error correction using species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.44cb5
- 摘要：
- sequence data and species tree information, and we describe an implementation of this framework in TreeFix, a new phylogenetic program for improving gene tree reconstructi
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
- 负责人：
- DOI：
- doi:10.5061/dryad.707td
- 摘要：
- ng, gene duplication and loss, horizontal gene transfer—all three potentially leading to species tree/gene tree discordance—and gene conversion. SimPhy implements
Data from: Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
- 负责人：
- DOI：
- doi:10.5061/dryad.7881
- 摘要：
- gene duplications and losses. Gene tree parsimony is a phylogenetic optimization criterion in which a species tree is selected that minimizes the number of gene duplicati
Data from: Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life
- 负责人：
- Burleigh, J. Gordon
- DOI：
- doi:10.5061/dryad.11vq033v
- 摘要：
- The first analyses of gene sequence data indicated that the eukaryotic tree of life consisted of a long stem of microbial groups ‘topped’ by a crown
