Data from: Assignment of homoeologues to parental genomes in allopolyploids for species tree inference, with an example from Fumaria (Papaveraceae)

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关键词：

coalescent stochasticity;incomplete lineage sorting;NRDP2;genome tree;substitution model error;allopolyploidy;coalescent simulation;homoeologues assignment;Fumaria;Papaveraceae

DOI：

doi:10.5061/dryad.7625d

摘要：

, such as substitution model error (failure of the model to account for the complexity of the data) and coalescent stochasticity (presence

Data from: Testing hypotheses for genealogical discordance in a rainforest lizard

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关键词：

Reptiles;Saproscincus basiliscus;phylogeography;hybridization;Population Genetics - Theoretical;Saproscincus lewisi;Population Genetics - Empirical

DOI：

doi:10.5061/dryad.dn0m4

摘要：

coalescent stochasticity or introgression. In this study, we present a strong case of mito-nuclear genealogical discordance in the Australian rainforest lizard

Data from: Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays

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关键词：

phylogeography;phylogenetics;Biogeography;Aphelocoma ultramarina;Miocene;Pliocene;speciation;Pleistocene

DOI：

doi:10.5061/dryad.1786

摘要：

that do not correct for genetic divergence that predates speciation. In addition to coalescent stochasticity, Haldane's Rule could account

Data from: Phylogeographic concordance factors quantify phylogeographic congruence among co-distributed species in the Sarracenia alata pitcher plant system

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关键词：

co-diversification;Peucetia viridans;species tree distribution;Exyra semicrocea;Community phylogeography;Fletcherimyia celarata;Pleistocene Epoch;Sarcophaga sarraceniae;Misumenoides formosipes;BUCKy;Sarracenia alata;Pleistocene;Macroseius biscutatus

DOI：

doi:10.5061/dryad.475t2

摘要：

on identifying monophyletic groups across species and do not account for coalescent stochasticity. Only long-standing phylogeographic breaks are li