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Data from: Phylogenetic tree estimation with and without alignment: new distance methods and benchmarking
负责人:
关键词:
Pair hidden Markov models;phylogenetic inference;Alignment free;Distance-based phylogenetics;statistical alignment
DOI:
doi:10.5061/dryad.n5r49
摘要:
st comparison of alignment-free distance-based methods against more conventional tree estimation methods. Our new method for calculating pairwise distances based
Data from: Wind dispersal is predicted by tree, not diaspore, traits in comparisons of neotropical species
负责人:
Augspurger, Carol
关键词:
crop size dispersal kernel functional traits rate of descent seedling recruitment seed shadow tree height wing-loading
DOI:
doi:10.5061/dryad.56cn4
摘要:
tree height 19–42 m), and were best fit by 12 separate anisotropic dispersal kernels and surveyed fecundities. Measured mean distance was highly correlated
Data from: Biogeographic variation of distance-dependent effects in an invasive tree species
负责人:
关键词:
pathogens;biological invasions;Triadica sebifera;Janzen-Connell effect;herbivores;natural enemies
DOI:
doi:10.5061/dryad.t952j0k
摘要:
the invasive tree Triadica sebifera escaped distance?dependent mortality when introduced to the US from China, and examine the roles of natural enemies in native
Data from: Intraspecific variation in seed dispersal of a Neotropical tree and its relationship to fruit and tree traits
负责人:
关键词:
wind dispersal;crown height;tails of distribution;Recruitment;Functional traits;seed shadow;wing loading.;Crown area;Platypodium elegans;Platypodium elegans J. Vogel (Leguminosae: Papilionoideae);current
DOI:
doi:10.5061/dryad.296ds
摘要:
correlated with dispersal distance. Measured seed shadows, particularly their distribution edges, differed significantly among six parents (DBH range 62–181 cm
Data from: Novel distances for Dollo data
负责人:
关键词:
Diversity Arrays Technology;Eucalyptus phylogeny;Eucalyptus;LogDet\/paralinear distances;Adnataria phylogeny;conditioning genomes;Dollo process;Additive Dollo Distance;gene content phylogeny;Adnataria
DOI:
doi:10.5061/dryad.2qt77
摘要:
on a phylogenetic tree but may be lost many times. We introduce a novel distance, the Additive Dollo Distance (ADD), that applies to data generated under a Dollo model
Data from: Probabilistic species tree distances: implementing the multispecies coalescent to compare species trees within the same model-based
负责人:
关键词:
Multispecies coalescent;Species tree;model comparison;Information theory;phylogenetic distances;phylogenetic networks
DOI:
doi:10.5061/dryad.rh4172f
摘要:
of phylogenetic tree distance can be far more informative than simply comparisons of topology and/or branch lengths alone. However, in their current form, these
Data from: Genetic distance for a general non-stationary Markov substitution process
负责人:
关键词:
Markov process;non-stationary;molecular clock;maximum likelihood;Genetic distance
DOI:
doi:10.5061/dryad.g7g0n
摘要:
homogeneity between nodes in the tree. Our measure of genetic distance reduces to the standard formulation if the data in question are consistent
Data from: Distance-dependent seed?seedling transition in the tree Castanopsis sclerophylla is altered by fragment size
负责人:
关键词:
seed\u2012seedling transition;Negative distance-dependence;habitat fragmentation;Castanopsis sclerophylla
DOI:
doi:10.5061/dryad.57q7865
摘要:
Negative distance-dependence of conspecific seedling mortality (NDisDM) is a crucial stabilizing force that regulates plant diversity, but it remains
Data from: Distance-decay differs among vertical strata in a tropical rainforest
负责人:
Basham, Edmund
关键词:
Amphibian Arboreal Biodiversity Biogeography Distance-decay Ectotherm Habitat-niche partitioning Vertical stratification
DOI:
doi:10.5061/dryad.3m1g61k
摘要:
ch tree, we defined assemblages of ground-dwelling, understory, or canopy species. We calculated horizontal distance-decay in similarity across all tree
Data from: Forest cover mediates genetic connectivity of northwestern cougars
负责人:
关键词:
Recent;Puma concolor;gene flow;Genetic structure;Landscape Genetics;Cougar;Multiple Regression on Distance Matrices;Boosted regression tree
DOI:
doi:10.5061/dryad.3bn62
摘要:
and highways. We quantified the effect of landscape resistance on genetic distance using multiple regression on distance matrices and boosted regression tree

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