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Data from: Timing marine-freshwater transitions in the diatom order Thalassiosirales
负责人:
关键词:
Thalassiosira pseudonana;molecular clock;diatoms;Thalassiosirales;Eocene;Freshwater;Miocene;Cyclotella nana;Marine
DOI:
doi:10.5061/dryad.85q50
摘要:
and evolutionary history of the model species, Cyclotella nana (= Thalassiosira pseudonana). The freshwater fossil record for Thalassiosirales is extensi
Data from: Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms
负责人:
关键词:
Thalassiosira pseudonana;Salinity;Thalassiosiraceae;diatoms;Thalassiosirales;Stephanodiscaceae;phylogeny;Freshwater;Marine
DOI:
doi:10.5061/dryad.8661
摘要:
are rare, irreversible, and lead to substantial species diversification. To test these hypotheses, we reconstructed the phylogeny of Thalassiosiral
Data from: The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella
负责人:
关键词:
Thalassiosira pseudonana;diatoms;Thalassiosirales;Freshwater;Marine
DOI:
doi:10.5061/dryad.8663
摘要:
BACKGROUND: Publication of the first diatom genome, that of Thalassiosira pseudonana, established it as a model species for experimental and genomic
Data from: Stressor fluxes alter the relationship between beta-diversity and regional productivity
负责人:
关键词:
Thalassiosira;stressor flux;Odontella;diversity-productivity relationships;Asterionellopsis;Navicula;meta-ecosystems;Melosira;Asterionella
DOI:
doi:10.5061/dryad.r8j9596
摘要:
-diversity (measured as Bray-Curtis dissimilarity) and regional productivity (measured as biovolume) under various levels of a stressor flux in meta-ecosystems
Data from: Experimental evolution of phytoplankton fatty acid thermal reaction norms
负责人:
关键词:
saturation;Thalassiosira pseudonana;omega-3;Fatty acid;temperature;reaction norm;thermal adaptation
DOI:
doi:10.5061/dryad.pn04m84
摘要:
thermal reaction norms of the marine diatom Thalassiosira pseudonana after ~500 generations (ca. 2.5 years) of experimental evolution at low (16°C) and high (31
Data from: Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation
负责人:
关键词:
Adaptation;positive selection;10 million years;Pseudo-nitzschia multistriata;Evolution;diatom;Pseudo-nitzschia australis
DOI:
doi:10.5061/dryad.30932
摘要:
of diatoms, Pseudo-nitzschia, Ditylum, and Thalassiosira that represent decreasing phylogenetic distances. The signal of positive selection was greatest bet
Data from: The effects of model choice and mitigating bias on the ribosomal tree of life
负责人:
关键词:
Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp
DOI:
doi:10.5061/dryad.7785h
摘要:
removal of fast-evolving or long-branched Archaea and Eukarya, and employed three different strategies to remove compositional heterogeneity to examine their

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