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Data from: Gene expression, chromosome heterogeneity and the fast-X effect in mammals
负责人:
关键词:
Synonymous substitutions;Hemizygosity;X chromosome;Fast-X;Non-synonymous substitutions;gene expression
DOI:
doi:10.5061/dryad.qr20n
摘要:
The higher rate of non-synonymous over synonymous substitutions (dN/dS) of the X chromosome compared with autosomes is often interpreted
Data from: How to calculate the non--synonymous to synonymous rate ratio of protein-coding genes under the Fisher--Wright mutation--selecti
负责人:
关键词:
influenza;monocots;PB2;Chloroplast;influenza;non-synonymous to synonymous rate ratio;Evolution;adaptive evolution;rbcL
DOI:
doi:10.5061/dryad.3r3q4
摘要:
polymerase) are given. The formulae give much insight into the dynamics of non-synonymous substitutions and may inform the development of methods to detect
Data from: Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombinati
负责人:
关键词:
Neurospora tetrasperma;recombination suppression;mat chromosomes;degeneration
DOI:
doi:10.5061/dryad.8429
摘要:
e each independently accumulated allele-specific non-synonymous codon substitutions in a time-dependent, and gene-specific manner
Data from: Synonymous genetic variation in natural isolates of Escherichia coli does not predict where synonymous substitutions occur
负责人:
关键词:
Experimental evolution;mutation rate;effective population size;genome evolution
DOI:
doi:10.5061/dryad.266g4
摘要:
to observe similar mutational patterns in evolution experiments. In fact, however, the pattern of synonymous substitutions in a long-term evolution experiment
Data from: Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations
负责人:
关键词:
DOI:
doi:10.5061/dryad.m4dr156
摘要:
Background: An excess of nonsynonymous substitutions, over neutrality, is considered evidence of positive Darwinian selection. Inference
Data from: SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences
负责人:
关键词:
DOI:
doi:10.5061/dryad.n7m28
摘要:
equently, it is of immense interest and importance to predict whether such substitutions are functional neutral or have deleterious effects. The accuracy of suc
Data from: Sex chromosome turnover contributes to genomic divergence between incipient stickleback species
负责人:
关键词:
chromosomal fusions;microarray;sex chromosome;QTL;Whole genome sequence;comparative genome hybridization;stickleback;Gasterosteus aculeatus;speciation
DOI:
doi:10.5061/dryad.40nk2
摘要:
non-synonymous substitution rates than autosomal genes in the Japan Sea lineage. Genomic regions of higher sequence divergence between species, genes with divergent expression
Data from: Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study
负责人:
关键词:
23-states CAT model;nucleotide composition bias;21-states CAT model;Pancrustacea;Arthropoda;Codon usage bias;phylogenomics
DOI:
doi:10.5061/dryad.7p1k8304
摘要:
and the amino acids-based trees is caused by substitutions within synonymous codon families (especially those of serine—TCN and AGY). We show that different arthropod
Data from: Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis.
负责人:
Nabholz, Benoit
关键词:
DOI:
doi:10.5061/dryad.82181
摘要:
of the decoupled dynamics of synonymous and nonsynonymous substitutions, we measure the lineage-specific mitochondrial mutation rate across 1,696 mammalian species

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