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Data from: Gene expression, chromosome heterogeneity and the fast-X effect in mammals
- 负责人:
- DOI:
- doi:10.5061/dryad.qr20n
- 摘要:
- The higher rate of non-synonymous over synonymous substitutions (dN/dS) of the X chromosome compared with autosomes is often interpreted
Data from: How to calculate the non--synonymous to synonymous rate ratio of protein-coding genes under the Fisher--Wright mutation--selecti
- 负责人:
- DOI:
- doi:10.5061/dryad.3r3q4
- 摘要:
- polymerase) are given. The formulae give much insight into the dynamics of non-synonymous substitutions and may inform the development of methods to detect
Data from: Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombinati
- 负责人:
- DOI:
- doi:10.5061/dryad.8429
- 摘要:
- e each independently accumulated allele-specific non-synonymous codon substitutions in a time-dependent, and gene-specific manner
Data from: Synonymous genetic variation in natural isolates of Escherichia coli does not predict where synonymous substitutions occur
- 负责人:
- DOI:
- doi:10.5061/dryad.266g4
- 摘要:
- to observe similar mutational patterns in evolution experiments. In fact, however, the pattern of synonymous substitutions in a long-term evolution experiment
Data from: Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations
- 负责人:
- 关键词:
- DOI:
- doi:10.5061/dryad.m4dr156
- 摘要:
- Background: An excess of nonsynonymous substitutions, over neutrality, is considered evidence of positive Darwinian selection. Inference
Data from: SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences
- 负责人:
- 关键词:
- DOI:
- doi:10.5061/dryad.n7m28
- 摘要:
- equently, it is of immense interest and importance to predict whether such substitutions are functional neutral or have deleterious effects. The accuracy of suc
Data from: Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data
- 负责人:
- DOI:
- doi:10.5061/dryad.r5cq0
- 摘要:
- the effect of synonymous substitutions and third codon positions in next-gen datasets still remains.
Data from: Sex chromosome turnover contributes to genomic divergence between incipient stickleback species
- 负责人:
- DOI:
- doi:10.5061/dryad.40nk2
- 摘要:
- non-synonymous substitution rates than autosomal genes in the Japan Sea lineage. Genomic regions of higher sequence divergence between species, genes with divergent expression
Data from: Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study
- 负责人:
- DOI:
- doi:10.5061/dryad.7p1k8304
- 摘要:
- and the amino acids-based trees is caused by substitutions within synonymous codon families (especially those of serine—TCN and AGY). We show that different arthropod
Data from: Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis.
- 负责人:
- Nabholz, Benoit
- 关键词:
- DOI:
- doi:10.5061/dryad.82181
- 摘要:
- of the decoupled dynamics of synonymous and nonsynonymous substitutions, we measure the lineage-specific mitochondrial mutation rate across 1,696 mammalian species