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Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
负责人:
关键词:
pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS
DOI:
doi:10.5061/dryad.6fv8fb4
摘要:
Single Nucleotide Polymorphism (SNP) markers have rapidly gained the center stage in genetics and genomics studies due to their abundance in mos
Data from: A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the ge
负责人:
Slate, Jon
关键词:
Adaptation Ecological Genetics Genomics/Proteomics Natural Selection and Contemporary Evolution Population Genetics - Empirical Quantitative Genetics
DOI:
doi:10.5061/dryad.7d467b6
摘要:
High density SNP microarrays (‘SNP chips’) are a rapid, accurate and efficient method for genotyping several hundred thousand polymorphisms in large
Data from: Finding the right coverage: The impact of coverage and sequence quality on SNP genotyping error rates
负责人:
关键词:
Mendelian error;Choloepus hoffmanni;genotyping error;single nucleotide polymorphism;Next Generation Sequencing;ddRAD
DOI:
doi:10.5061/dryad.8g470
摘要:
Restriction-enzyme-based sequencing methods enable the genotyping of thousands of single nucleotide polymorphism (SNP) loci in non-model organisms
Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce
负责人:
关键词:
Environmental DNA;Species Interactions;Bioinfomatics\/Phyloinfomatics;Gymnosperms
DOI:
doi:10.5061/dryad.tr87v
摘要:
by validating 4267 of the predicted in silico SNPs by genotyping trees from P. mariana populations. The true positive rate was 96.2%, for in silico SNPs compared
Data from: Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks
负责人:
关键词:
SNP detection;Quercus robur;Infinium;genotyping;oaks;cluster compression;Quercus petraea
DOI:
doi:10.5061/dryad.fd862
摘要:
An Illumina Infinium SNP genotyping array was constructed for European white oaks. Six individuals of Quercus petraea and Q. robur were considered
Data from: Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries
负责人:
关键词:
molecular epidemiology;spa t003;phylotyping;MRSA;WGST;SNP assays;Staphylococcus aureus
DOI:
doi:10.5061/dryad.73p5d
摘要:
d to be employed to improve subtyping of dominant local MRSA strains (e.g., spa type t003). Methods: Phylogenetically critical, or canonical, SNPs (can-SNPs) wer
Data from: Genetic variation and clonal diversity in introduced populations of Mimulus guttatus assessed by genotyping at 62
负责人:
关键词:
genetic diversity;Anthropocene;clonal growth;Mimulus;Erythranthe guttata;clonal diversity;biological invasions;invasive species;SNP genotyping;Mimulus guttatus;non-native species
DOI:
doi:10.5061/dryad.91v3n
摘要:
ween studies. Aims: We investigated the utility of a newly developed set of SNP markers, suitable for high throughput genotyping to characterise

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