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Data from: Testing pipelines for genome-wide SNP calling from Genotyping-By-Sequencing (GBS) data for Pinus ponderosa
负责人:
关键词:
pipeline;reference-based;SNP;Pinus ponderosa;de novo;now;GBS
DOI:
doi:10.5061/dryad.6fv8fb4
摘要:
Single Nucleotide Polymorphism (SNP) markers have rapidly gained the center stage in genetics and genomics studies due to their abundance in mos
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
负责人:
关键词:
SNP whole genome analysis reindeer Conservation genetics and biodiversity
DOI:
doi:10.5061/dryad.29fp0
摘要:
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip
Data from: Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls
负责人:
关键词:
Vitis phylogeny;Vitis;SNP array;Vitis9KSNP array
DOI:
doi:10.5061/dryad.4181f
摘要:
e, we demonstrate that the use of hybridization intensity data, rather than genotype calls, reduces the effects of ascertainment bias. Whereas traditional SNP calls
Data from: Demographic history and adaptation account for clock gene diversity in humans
负责人:
关键词:
environment;natural selection;population structure;Adaptation;Clock genes
DOI:
doi:10.5061/dryad.pr078
摘要:
distributions at 116?000 single-nucleotide polymorphisms (SNPs) of 25 human clock and clock-related genes from the 1000Genomes Project, and at a reference data
Data from: Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks
负责人:
关键词:
SNP detection;Quercus robur;Infinium;genotyping;oaks;cluster compression;Quercus petraea
DOI:
doi:10.5061/dryad.fd862
摘要:
An Illumina Infinium SNP genotyping array was constructed for European white oaks. Six individuals of Quercus petraea and Q. robur were considered
Data from: A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the ge
负责人:
Slate, Jon
关键词:
Adaptation Ecological Genetics Genomics/Proteomics Natural Selection and Contemporary Evolution Population Genetics - Empirical Quantitative Genetics
DOI:
doi:10.5061/dryad.7d467b6
摘要:
), a personality trait that has been widely studied in great tits and other species. No SNPs reached genome-wide significance, including at DRD4, a candidate gene. Howeve
Data from: Fast and cost-effective genetic mapping in apple using next-generation sequencing
负责人:
关键词:
Malus x domestica
DOI:
doi:10.5061/dryad.55t54
摘要:
t SNPs have too much missing data across samples to be useful for genetic mapping. After filtering for genotype quality and missing data, only 6% of the 85
Data from: Linkage disequilibrium and inversion-typing of the Drosophila melanogaster Genome Reference Panel
负责人:
关键词:
inversion;linkage disequilibirum;drosophila melanogaster
DOI:
doi:10.5061/dryad.06jt7
摘要:
x percent of variant SNPs are highly correlated with at least one other SNP, and the mean number of highly correlated SNPs per variant over the whole genome
Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce
负责人:
关键词:
Environmental DNA;Species Interactions;Bioinfomatics\/Phyloinfomatics;Gymnosperms
DOI:
doi:10.5061/dryad.tr87v
摘要:
by validating 4267 of the predicted in silico SNPs by genotyping trees from P. mariana populations. The true positive rate was 96.2%, for in silico SNPs compared

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