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Data from: Special features of RAD Sequencing data: implications for genotyping
负责人:
关键词:
Genomics\/Proteomics;Caenorhabditis elegans;Population Ecology;Bioinfomatics\/Phyloinfomatics;Ecological Genetics;Heliconius melpomene
DOI:
doi:10.5061/dryad.218p2
摘要:
RAD Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods
Data from: Sequence capture versus restriction site associated DNA sequencing for shallow systematics
负责人:
关键词:
allele frequency spectrum;Coalescent methods;Next-generation sequencing;ultraconserved elements;Xenops minutus;Birds;concordance analysis;massively parallel sequencing
DOI:
doi:10.5061/dryad.604b8
摘要:
Sequence capture and restriction site associated DNA sequencing (RAD-Seq) are two genomic enrichment strategies for applying
Data from: BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand speci
负责人:
关键词:
RNA-seq libraries;Strand-specific RNA-seq;BrAD-Seq;Solanum lycopersicum cv M82: LA3475;NGS;Illumina;bioinformatics
DOI:
doi:10.5061/dryad.9mq14
摘要:
nded cDNA to capture and incorporate a sequencing adapter. Breath Adapter Directional sequencing (BrAD-seq) reduces sample handling and requires far fewer
Data from: A framework phylogeny of the American oak clade based on sequenced RAD data
负责人:
关键词:
Expressed sequence tags (EST);Quercus;Next-generation sequencing;plant systematics;Fagaceae;restriction-site associated DNA;partitioned RAD;phylogenomics
DOI:
doi:10.5061/dryad.ts2hj
摘要:
e, we utilize next-generation sequencing of restriction-site associated DNA (RAD-Seq) to resolve a framework phylogeny of a predominantly American clade of oaks
Data from: Attack of the PCR clones: rates of clonality have little effect on RAD-seq genotype calls
负责人:
关键词:
conservation genetics;Salvelinus fontinalis;methodology;genotyping;Sander vitreus;Fish;PCR duplicates;Oncorhynchus keta;Coregonus artedi;Population Genetics - Empirical
DOI:
doi:10.5061/dryad.3mq4631
摘要:
(RAD-seq) datasets, which are increasingly being used for molecular ecology. To determine the influence PCR clones and the bioinformatic handling of clones
Data from: Identification of sex-specific molecular markers using restriction site associated DNA sequencing (RAD-seq)
负责人:
关键词:
RAD-seq;Evolution;reptile;sex chromosome;Anolis carolinensis
DOI:
doi:10.5061/dryad.pq608
摘要:
of restriction site associated DNA (RAD) sequencing, or RAD-seq, to identify sex-specific molecular markers and subsequently determine whether a species has male
Data from: RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene
负责人:
关键词:
colour polymorphism;Restriction site associated DNA sequencing;supergene;Cepaea nemoralis;RAD-seq;Heliconius;snail
DOI:
doi:10.5061/dryad.560r4
摘要:
–associated DNA sequencing (RAD-Seq) of two parents and 22 offspring, we identified 44 anonymous markers putatively linked to the colour (C) and banding
Data from: PSMC (pairwise sequentially Markovian coalescent) analysis of RAD (restriction site associated DNA) sequencing data
负责人:
关键词:
Pairwise Sequential Markovian Coalescent (PSMC);whole genome sequencing;threespine stickleback;demographic history;RAD sequencing
DOI:
doi:10.5061/dryad.0618v
摘要:
to reference genome-aligned restriction site associated DNA (RAD) data. We find that RAD data can potentially be used for PSMC analysis, but at present
Data from: Restriction site-associated DNA sequencing (RAD-seq) reveals an extraordinary number of transitions among gecko sex-determining systems
负责人:
关键词:
evolution lizard phylogeny reptile sex chromosome
DOI:
doi:10.5061/dryad.n69t3
摘要:
the sex chromosome systems in the large number of species with cryptic, homomorphic sex chromosomes. Restriction site-associated DNA sequencing (RAD-seq) is a critical
Data from: HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA
负责人:
关键词:
anthropogenic perturbations;subfossils;time series.;genetic diversity;Abies alba;exome reduction;population genomics;ancient DNA;Holocene;hybridization capture;RAD sequencing
DOI:
doi:10.5061/dryad.m94f4
摘要:
d on RAD-sequencing loci have circumvented this limitation and opened avenues to the study of samples characterized by degraded DNA, such as historical speci

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