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Data from: Knowledge-based prediction of protein backbone conformation using a structural alphabet
- 负责人:
- 关键词:
- structural alphabet;Structure prediction;protein structures;structural bioinformatics;protein blocks
- DOI:
- doi:10.5061/dryad.3f5q5
- 摘要:
- otypes. This form of analyzing proteins involves drafting its structure as a string of Protein Blocks. Predicting the local structure of a protein in terms of protein
Data from: An improved hypergeometric probability method for identification of functionally linked proteins using phylogenetic profiles
- 负责人:
- DOI:
- doi:10.5061/dryad.m6t4j
- 摘要:
- Predicting functions of proteins and alternatively spliced isoforms encoded in a genome is one of the important applications of bioinformatic
Data from: SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences
- 负责人:
- 关键词:
- DOI:
- doi:10.5061/dryad.n7m28
- 摘要:
- on. Because of the scarcity of orthologous protein sequences in the past, the existing prediction algorithms all include sequences of protein paralogs
Data from: Predicting function from sequence in a large multifunctional toxin family
- 负责人:
- DOI:
- doi:10.5061/dryad.16pg7
- 摘要:
- cess, and in-silico tools which allow function to be predicted from sequence information are essential. Toxins are typically members of large multifunctional families
Data from: Sequence co-evolution gives 3D contacts and structures of protein complexes
- 负责人:
- DOI:
- doi:10.5061/dryad.6t7b8
- 摘要:
- t are close in space with sufficient accuracy to determine the three-dimensional structure of the protein complexes. We evaluate prediction performance
Data from: In silico site-directed mutagenesis informs species-specific predictions of chemical susceptibility derived from the Sequenc
- 负责人:
- DOI:
- doi:10.5061/dryad.2tg6967
- 摘要:
- predictions comparing the primary sequence and functional domain sequence of proteins for more than 90 % of the investigated species, but also identi
Data from: Energy storage and fecundity explain deviations from ecological stoichiometry predictions under global warming
- 负责人:
- Zhang, Chao
- 关键词:
- General stress paradigm global climate change non-consumptive predator effects RNA:DNA rapid evolution stress ecology multiple stressors
- DOI:
- doi:10.5061/dryad.mm6jc
- 摘要:
- up to ecosystem functions. Recently, stoichiometric theory linked these levels through changes in body stoichiometry, predicting that both higher te
Data from: Biophysically inspired model for functionalized nanocarrier adhesion to cell surface: roles of protein expression and mechanical factors
- 负责人:
- DOI:
- doi:10.5061/dryad.4h76d
- 摘要:
- ve the model predictions at steady state. We demonstrate the predictive utility of our model by predicting partitioning coefficients of functionalized NCs in mic
Data from: Using viromes to predict novel immune proteins in non-model organisms
- 负责人:
- Quistad, Steven D.
- 关键词:
- Viruses evolution immunity coral comparative genomics Corals Model Organisms Immunology Genomics
- DOI:
- doi:10.5061/dryad.tb2p4
- 摘要:
- animals, gene-editing capabilities, and in vitro cell cultures. Viromes isolated from corals and compared with the predicted coral proteome resulted in 2503 coral proteins
Data from: Local prey community composition and genetic distance predict venom divergence among populations of the northern Pacific rattlesnake
- 负责人:
- DOI:
- doi:10.5061/dryad.rg098gq
- 摘要:
- and environmental variables, and that this variation occurred along axes defining previously observed functional trade-offs between venom proteins that have neurotoxic