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Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
负责人:
关键词:
Prochlorococcus;Genome
DOI:
doi:10.5061/dryad.k282c
摘要:
The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system
Data from: Strain specific differences in rates of Photosystem II repair in picocyanobacteria correlate to differences in FtsH pro
负责人:
关键词:
FtsH;Synechococcus WH 8102;photosynthesis;Prochlorococcus marinus MIT 9313;photophysiology;Photosystem II;Prochlorococcus marinus MED4;picocyanobacteria
DOI:
doi:10.5061/dryad.8dc747r
摘要:
yanobacteria: the low light, high nutrient strain Prochlorococcus marinus MIT 9313; the high light, low nutrient Prochlorococcus marinus MED 4; and the high light, high
Data from: Early photosynthetic eukaryotes inhabited low-salinity habitats
负责人:
关键词:
Cyanothece sp. PCC8801;Gloeomargarita lithophora;Volvox carteri nagariensis UTE2908;Fistulifera sp. JPCC DA0580;Pseudendoclonium akinetum;Pyramimonas parkeae;Precambrian;Anabaena cylindrica PCC7122;Photosynthetic eukaryotes;Cyanophora paradoxa;Prochlorococcus marinus str. MIT9515;Parachlorella kessleri;Synechococcus sp. WH8016;Synechococcus sp. PCC7002;Cyanidium caldarium;Cycas taitungensis;Pedinomonas minor;Chlamydomonas reinhardtii;Psilotum nudum;relaxed molecular clock.;Gloeobacter violaceus PCC7421;Prochloron didemni P2 Fiji;Anthoceros formosae;Mesoproterozoic;Thermosynechococcus elongatus BP1;Welwitschia mirabilis;Prasinoderma colonial;Pseudanabaena biceps PCC7429;Cyanothece sp. PCC7425;Angiopteris evecta;Cyanothece sp. PCC7424;Chlorokybus atmophyticus;Synechococcus sp. JA-3-3Ab;Coccomyxa sp. C169;Floydiella terrestris;Schizomeris leibleinii;Richelia intracellularis HH01;Microcystis aeruginosa NIES843 Micromonas sp. RCC299;Nodularia spumigena CCY9414;Porphyra purpurea;Adiantum capillus veneris;Buus microphylla;Calycanthus floridus;Nymphaea alba;Phaeodactylum tricornutum;Spinacia oleracea;Nodosilinea nodulosa PCC7104;Odontella sinensis;Chloroplast;Physcomitrella patens subsp patens;Great Oxidation Event;Aneura mirabilis;Cyanobacteria;Leptolyngbya sp. PCC7375;Synedra acus;Prochlorococcus marinus str. MIT9211;Cyanobium sp. PCC7001;Leptolyngbya sp. PCC7376;Verdigellas peltata;Bryopsis hypnoides;Gracilaria tenuistipitata;Synechococcus sp. RCC307;Ptilidium pulcherrimum;Prasinococcus sp. CCMP1194;Dunaliella salina;Nostoc azollae 0708;Ranunculus macranthus;Microcoleus vaginatus FGP2;Scenedesmus obliques;Synechococcus sp. PCC7335;Chaetosphaeridium globosum;Oscillatoria sp. PCC6506;Pseudanabaena sp. PCC7367;Raphidiopsis brookii D9;Richelia intracellularis HM01;Trichodesmium erythraeum IMS101;Prochloron didemni P3 Solomon;primary endosymbiotic event;Klebsormidium flaccidum;Acaryochloris marina MBIC11017;Arthrospira sp. PCC8005;Marchantia polymorpha;Staurastrum punctulatum;Coffea arabica;Porphyra yezoensis;Crocosphaera watsonii WH0003;Stigeoclonium helveticum;Pleurocapsa sp. PCC7327;Proterozoic;Gnetum parvifolium;Thalassiosira oceanica CCMP1005;Chara vulgaris;Leptosira terrestris;Cyanidioschyzon merolae strain 10D;Synechococcus sp. CB0101;Paulinella chromatophora;Nostoc punctiforme PCC73102;Pycnococcus provasolii;Illicium oligandrum;Prochlorococcus marinus str. AS9601;Nostoc sp. PCC7120;Fischerella sp. JSC11;Synechocystis sp. PCC6803;Cyanobium gracile PCC6307;Zygnema circumcarinatum;Microcoleus chthonoplastes PCC7420;Neoproterozoic;Pinus contorta;Calothrix sp. PCC6303;Ephedra equisetina;Synechococcus elongatus PCC6301;Amborella trichopoda;Cryptomeria japonica;Monomasti sp. OKE1;Pseudanabaena sp. PCC6802;phylogenomics;Lyngbya sp. PCC8106;Pre-Cambrian;Synechococcus sp. JA-2-3B'a(2-13);Oltmannsiellopsis viridis Oocystis solitaria SAG83 80;Syntrichia ruralis;Nephroselmis olivacea;Synechococcus sp. CC9605;Mesostigma viride;Ostreococcus tauri;Lyngbya majuscula 3L;Oedogonium cardiacum;Prochlorococcus marinus str. MIT9303;Cyanothece sp. CCY0110
DOI:
doi:10.5061/dryad.421p2
摘要:
event occurred. We present phylogenomic and molecular clock analyses, including data from cyanobacterial and chloroplast genomes using a Bayesian approach
Data from: The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss
负责人:
关键词:
Prochlorococcus;genome streamlining;Pelagibacter;Genome organization;Synechococcus;Cyanobacteria;reductive evolution;catalase
DOI:
doi:10.5061/dryad.7j8c5s5j
摘要:
-living organisms, but it has occurred in the numerically dominant open-ocean bacterioplankton Prochlorococcus and Pelagibacter, and in these cases the reduction
Data from: The effects of model choice and mitigating bias on the ribosomal tree of life
负责人:
关键词:
Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp
DOI:
doi:10.5061/dryad.7785h
摘要:
. The ribosomal machinery, universal to all cellular life, represents a protein repertoire resistant to horizontal gene transfer, which provides a largely congruent
Data from: Coexistence of evolving bacteria stabilized by a shared Black Queen function
负责人:
关键词:
stable coexistence;Experimental evolution;Prochlorococcus marinus;public goods;Escherichia coli;hydrogen peroxide;catalase;Black Queen Hypothesis
DOI:
doi:10.5061/dryad.2753k
摘要:
The Black Queen Hypothesis (BQH) was originally proposed to explain the dependence of some marine bacteria on helper organisms for protection fro

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