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Data from: Displayed trees do not determine distinguishability under the network multispecies coalescent
负责人:
关键词:
Species tree;Gene tree;maximum likelihood;identifiability;phylogeny;rooted triple;hybridization;quartet
DOI:
doi:10.5061/dryad.t2d38
摘要:
ween species. Probabilistic models using the multispecies coalescent can be used in this framework for likelihood-based inference of both network topologies
Data from: Using genomic location and coalescent simulation to investigate gene tree discordance in Medicago L.
负责人:
关键词:
Species tree;incomplete lineage sorting;Gene tree;paralogy;Phylogenetic Incongruence;coalescent simulation;hybridization;principal tree;genomic location
DOI:
doi:10.5061/dryad.85c0s
摘要:
, blocks of linked genes are grouped according to their hybrid history. Existing multispecies coalescent software can then be applied to rec
Data from: Probabilistic species tree distances: implementing the multispecies coalescent to compare species trees within the same model-based
负责人:
关键词:
Multispecies coalescent;Species tree;model comparison;Information theory;phylogenetic distances;phylogenetic networks
DOI:
doi:10.5061/dryad.rh4172f
摘要:
tree models. Multispecies coalescent models (MSC) parameterize the discrete probability distribution of gene trees conditioned upon a species tree with a particular topology and set
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
负责人:
Nakhleh, Luay
关键词:
Multispecies network coalescent reticulation incomplete lineage sorting phylogenetic network Bayesian inference RJMCMC
DOI:
doi:10.5061/dryad.3h185
摘要:
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogenetic network
Data from: Disentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes
负责人:
关键词:
species network;adaptive radiation;Cichlidae;introgression
DOI:
doi:10.5061/dryad.62qn5
摘要:
related riverine lineages received genetic material from Cyphotilapiini. We then applied the multispecies coalescent model to estimate the species
Data from: Phylogeny and biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)
负责人:
关键词:
Ancestral area reconstructions;coalescent approaches;haplotype networks;neotropics;species delimitation
DOI:
doi:10.5061/dryad.p8cz8w9kq
摘要:
. Morphological data supported the recognition of four of the five potential species suggested by GMYC, all of which were also supported by a multispecies coalescent
Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes
负责人:
关键词:
Species tree;lungfish;Coalescence;phylogenomic;long-branch attraction;model misspecification;likelihood mapping;Gene tree;coelacanth;Systematic error;Compositional heterogeneity;missing data
DOI:
doi:10.5061/dryad.gd74v
摘要:
. The multispecies coalescent method reconstructed strongly supported topologies that were congruent with concatenation, despite pervasive gene tree heterogeneity. We rejec
Data from: Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
负责人:
关键词:
Bioinfomatics/Phyloinfomatics Genomics/Proteomics Hybridization Insects Molecular Evolution Phylogenetic Theory and Methods
DOI:
doi:10.5061/dryad.tn47c
摘要:
ng a recently devised framework that combines the multispecies coalescent with phylogenetic networks. This framework allows us to capture ILS

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