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Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
负责人:
关键词:
supertree methods;incomplete lineage sorting;Concatenation;species tree estimation;MRL;MRP;multilocus bootstrapping;gene tree estimation error;MP-EST;gene tree discordance
DOI:
doi:10.5061/dryad.310q3
摘要:
. Our study suggests that coalescent-based species tree methods may be key to estimating highly accurate species trees from multiple loci.
Data from: Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays
负责人:
关键词:
phylogeography;phylogenetics;Biogeography;Aphelocoma ultramarina;Miocene;Pliocene;speciation;Pleistocene
DOI:
doi:10.5061/dryad.1786
摘要:
ent innovations for dating speciation events with the analytical power of species trees, where multilocus data are considered in a coalescent context
Data from: Comparison of methods for molecular species delimitation across a range of speciation scenarios
负责人:
关键词:
molecular species delimitation;Multispecies coalescent;Bayesian phylogenetics;Simulation;generalized mixed Yule-coalescent;Poisson tree processes;speciation
DOI:
doi:10.5061/dryad.739bs
摘要:
molecular approaches for species delimitation. Among the most widely used methods, the generalized mixed Yule-coalescent (GMYC) and Poisson tree processes (PTP) wer
Data from: Local coexistence and genetic isolation of three pollinator species on the same fig tree species
负责人:
关键词:
fig wasp;microsatellite;Pleistodontes imperialis;Hybridisation;cryptic species;speciation
DOI:
doi:10.5061/dryad.54527
摘要:
% of figs (where mating occurs) containing wasps from two or three species. However, there was no evidence for gene flow between them. Confirmed cases
Data from: Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)
负责人:
关键词:
Aliatypus starretti;Aliatypus thompsoni;Aliatypus roxxiae;mygalomorph spiders;species delimitation;multispecies coalescent model;cryptic species
DOI:
doi:10.5061/dryad.68s40
摘要:
) from California. Multiple approaches were used to determine species boundaries in this highly genetically fragmented group, including both multilocus
Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets
负责人:
关键词:
Bayesian model comparison;Bacterial species;Bacillus;Multilocus species delimitation;Dynamic programming;present
DOI:
doi:10.5061/dryad.3cb25
摘要:
Multilocus sequence data provide far greater power to resolve species limits than the single locus data typically used for broad surveys of clades
Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning
负责人:
关键词:
Multispecies coalescent;nuclear single-copy genes;in-silico cloning;polyploidy;Hordeum;phylogeny;Evolution;systematics
DOI:
doi:10.5061/dryad.fn2nt
摘要:
t it is possible to obtain a multilocus species-level phylogeny for di- and polyploid taxa by combining PCR with next-generation sequencing, without cloning
Data from: A Bayesian supertree model for genome-wide species tree reconstruction
负责人:
关键词:
Tree distance;supertree;reconciliation;phylogenomics;hierarchical Bayesian model
DOI:
doi:10.5061/dryad.74922
摘要:
our approach in comparison with other species tree approaches able to deal with multilabeled trees. Our method ranked best, under both simulated
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
a hierarchical phylogenetic model in which the evolution of species, locus, and gene trees is governed by global and local parameters (e.g., genome-wide, species
Data from: Influence of gene flow on divergence dating – implications for speciation history of Takydromus grass lizards
负责人:
关键词:
gene flow;Reptiles;population demography;parapatric speciation;Takydromus spp.
DOI:
doi:10.5061/dryad.4p7n5
摘要:
the speciation processes and divergence histories of three monophyletic Takydromus species endemic to Taiwan, we sequenced 20 nuclear loci and combined with one

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