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Data from: Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data
负责人:
关键词:
species delimitation;Metabarcoding;Drosophila;DNA Barcoding;PTP;speciation;coalescent;GMYC;OTU;Lepidoptera;molecular dating;Cypraeidae;NGS;rotifera
DOI:
doi:10.5061/dryad.8rv46
摘要:
evolutionarily significant units of diversity. The Generalized Mixed Yule Coalescent (GMYC) and the Poisson Tree Process (PTP) are methods that use ultrametric (GMYC or PTP
Data from: Cryptic diversity and discordance in single-locus species delimitation methods within horned lizards (Phrynosomatidae: Phrynosoma)
负责人:
关键词:
ABGD;GMYC;PTP;speciation;ND4;Phrynosoma
DOI:
doi:10.5061/dryad.r7989
摘要:
ng four tree-based (single-threshold GMYC, multiple-threshold GMYC, bPTP, mPTP) and one distance-based (ABGD) species delimitation models. We were particular
Data from: Detecting evolutionarily significant units above the species level using the Generalized Mixed Yule Coalescent method
负责人:
关键词:
clade-dependent;rate shift;phylogenetic clustering;Birth-death;Simulation;diversification;clade-independent;relative extinction rate
DOI:
doi:10.5061/dryad.3rt26
摘要:
diversity patterns, using the Generalized Mixed Yule Coalescent (GMYC) method to test for the existence of evolutionarily significant units above the species (higher
Data from: Delimiting species-poor datasets using single molecular markers: a study of barcode gaps, haplowebs and GMYC
负责人:
关键词:
species delimitation;haplowebs;Heterozygosity;barcode gap;generalized mixed Yule-coalescent model;taxonomy;systematics;molecular markers
DOI:
doi:10.5061/dryad.t7m5v
摘要:
s rarely been the focus of such attempts. Here we compare the performance of barcode gap detection, haplowebs and generalized mixed Yule–coalescent (GMYC
Data from: Comparison of methods for molecular species delimitation across a range of speciation scenarios
负责人:
关键词:
molecular species delimitation;Multispecies coalescent;Bayesian phylogenetics;Simulation;generalized mixed Yule-coalescent;Poisson tree processes;speciation
DOI:
doi:10.5061/dryad.739bs
摘要:
molecular approaches for species delimitation. Among the most widely used methods, the generalized mixed Yule-coalescent (GMYC) and Poisson tree processes (PTP) wer
Data from: Rarity and incomplete sampling in DNA-based species delimitation
负责人:
关键词:
effective population size;Coleoptera;Scarabaeidae;singletons;Sericini
DOI:
doi:10.5061/dryad.h6q11
摘要:
, the Generalized Mixed Yule Coalescent (GMYC) analysis as well as various other approaches for DNA-based species delimitation (Automatic Barcode Gap Discovery
Data from: Ancient landscapes of the Namib Desert harbour high levels of genetic variability and deeply divergent lineages for Collembola
负责人:
关键词:
Folsomides
DOI:
doi:10.5061/dryad.2294qd9
摘要:
samples which contained Collembola and sequenced them at the COI gene locus. In the absence of previous genetic data for these taxa, we used GMYC analyses
Data from: Phylogeny and biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)
负责人:
关键词:
Ancestral area reconstructions;coalescent approaches;haplotype networks;neotropics;species delimitation
DOI:
doi:10.5061/dryad.p8cz8w9kq
摘要:
coalescent approach (GMYC). GMYC identified five potential species within the P. kerere species complex that were subsequently evaluated in the light of morphology
Data from: Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets
负责人:
关键词:
genealogical;species;DNA;neutral;clusters;speciation;coalescent
DOI:
doi:10.5061/dryad.0hv88
摘要:
ecially in biodiversity surveys from environmental DNA samples. The Generalized Mixed Yule Coalescent (GMYC) method is a likelihood method for delimiting species by fitting
Data from: Testing the potential of DNA barcoding in vertebrate radiations: the case of the littoral cichlids (Pisces, Perciformes, Cichlidae) from Lake Tanganyika
负责人:
关键词:
DNA Barcoding;adaptive radiation;species discovery;Cichlidae;Fish;identification;COI
DOI:
doi:10.5061/dryad.787d9
摘要:
identified. Additionally, the potential of two species delineation methods was tested. The General Mixed Yule Coalescent (GMYC) analysis suggested 70

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